Pairwise Alignments

Query, 200 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella sp. ANA-3

Subject, 232 a.a., RNA polymerase sigma factor from Rhodopseudomonas palustris CGA009

 Score = 68.6 bits (166), Expect = 9e-17
 Identities = 53/176 (30%), Positives = 82/176 (46%), Gaps = 12/176 (6%)

Query: 15  DEQLMQRYAKGDGKAFEQLYLKHKGALYRYFVRQLGDKQLAEDLYQETWGRVIRAAANYE 74
           D  L+ R A  D  AF  L  +H    Y   +R LG+   AED+ Q+T  +V      ++
Sbjct: 49  DADLLDRLATDDEAAFRMLVERHIDRAYSIALRILGNSADAEDVVQDTMLKVWTHRGRWQ 108

Query: 75  PS-AKFNTWLYRIAHNLLIDHVRAVKPVDLVSHDNEEGLDTFVGAEQEQPDV--HWQETQ 131
              AKF+TWLYR+  N  ID  R  KP         E ++        QPD     +  +
Sbjct: 109 HGRAKFSTWLYRVVSNRCIDLRR--KP-------RTENVEAVPEVADTQPDAVRVIERNE 159

Query: 132 KSLLLKTCIALLPQVQKEAFILNIEMGFTAAVISDIAGVTLEATKSRIRYAYQSLK 187
            S LL+  +  LP+ Q+ A IL+     + A I+++   T+ A +S ++   Q L+
Sbjct: 160 LSNLLEAAMQRLPEQQRIAVILSYHENMSNAEIAEVMDTTIAAVESLLKRGRQQLR 215