Pairwise Alignments

Query, 200 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella sp. ANA-3

Subject, 195 a.a., sigma-70 family RNA polymerase sigma factor from Rhodopseudomonas palustris CGA009

 Score = 82.8 bits (203), Expect = 4e-21
 Identities = 56/171 (32%), Positives = 86/171 (50%), Gaps = 6/171 (3%)

Query: 23  AKGDGKAFEQLYLKHKGALYRYFVRQLGDKQLAEDLYQETWGRVIRAAANYEPS-AKFNT 81
           A  D  AFE L+      L  YF R+ GD  LAE++ QET   V R AA ++P+ A  +T
Sbjct: 24  AAQDRAAFETLFRHFAPRLKSYFARRGGDPALAEEITQETMVSVWRNAAQFDPARASAST 83

Query: 82  WLYRIAHNLLIDHVRAVKPVDLVSHDNEEGLDTFVGAEQEQPDVHWQETQKSLLLKTCIA 141
           W++ IA NL ID +R  K      HD       FV  E+E PD   + T+    ++  + 
Sbjct: 84  WIFTIARNLSIDRLRQAKRPGFDPHD-----PAFVPDEEEPPDRRLERTETEQRVREVME 138

Query: 142 LLPQVQKEAFILNIEMGFTAAVISDIAGVTLEATKSRIRYAYQSLKDCVNA 192
            L   +K   +L+     + + I++  G+ +   KSRIR A+  L+  ++A
Sbjct: 139 TLSFNEKSVLMLSFYENQSHSEIAEQLGLPVGTVKSRIRLAFGKLRAALDA 189