Pairwise Alignments

Query, 200 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella sp. ANA-3

Subject, 247 a.a., RNA polymerase sigma-70 RpoE type from Marinobacter adhaerens HP15

 Score = 68.6 bits (166), Expect = 9e-17
 Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 3/174 (1%)

Query: 9   HAHEHTDEQLMQRYAKGDGKAFEQLYLKHKGALYRYFVRQLGDKQLAEDLYQETWGRVIR 68
           H    TD QL+++   GD  AF+ L +K++  +     R + D Q   DL QET+ +  R
Sbjct: 54  HPDSQTDLQLVRKVRNGDRAAFDLLVVKYQSRVASIISRYVYDSQEVMDLTQETFVKAFR 113

Query: 69  AAANYEPSAKFNTWLYRIAHNLLIDHVRAVKPVDLVSHDNEEGLDTFVGA---EQEQPDV 125
           A   +   + F TWLYRIA N   +++ +       S D+ E  +   G+   +   P+ 
Sbjct: 114 AIERFRGDSAFYTWLYRIAVNTAKNYLESRGRRPQGSADSAEAENFDDGSRLRDTASPER 173

Query: 126 HWQETQKSLLLKTCIALLPQVQKEAFILNIEMGFTAAVISDIAGVTLEATKSRI 179
             Q  Q    L   IA LP+  + AF+L    G +   I+ I    +   +SRI
Sbjct: 174 LLQREQLQKELNKAIAQLPEELRSAFLLREYDGLSYEDIAGILECPIGTVRSRI 227