Pairwise Alignments

Query, 200 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella sp. ANA-3

Subject, 184 a.a., RNA polymerase sigma factor from Dyella japonica UNC79MFTsu3.2

 Score =  134 bits (338), Expect = 8e-37
 Identities = 71/174 (40%), Positives = 99/174 (56%), Gaps = 1/174 (0%)

Query: 15  DEQLMQRYAKGDGKAFEQLYLKHKGALYRYFVRQLGDKQLAEDLYQETWGRVIRAAANYE 74
           D  LM  YA+GD  AFE LY +H+G LYR+ +R      +A++L+QETW RVI A   Y+
Sbjct: 8   DATLMLAYAQGDLGAFEALYARHRGTLYRFLLRACRQPAVADELFQETWSRVIAARERYQ 67

Query: 75  PSAKFNTWLYRIAHNLLIDHVRAVKPVDLVSHDNEEGLDTFVGAEQEQPDVHWQETQKSL 134
           P AKF TWL +IAHNLL+D  R  +P  L     E  +       QEQP+    + ++  
Sbjct: 68  PQAKFTTWLLQIAHNLLVDSYRRKRPT-LDGEAGELAIAQMEAPAQEQPEHALSDFEQRR 126

Query: 135 LLKTCIALLPQVQKEAFILNIEMGFTAAVISDIAGVTLEATKSRIRYAYQSLKD 188
            L+  I  LP  Q+ A +L +E   +   I+D+ GV  E  KSR+RYA   L++
Sbjct: 127 RLQRAIEQLPDEQRTAVLLRLEQELSLEEIADVTGVGRETVKSRLRYAMNKLRE 180