Pairwise Alignments

Query, 200 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella sp. ANA-3

Subject, 186 a.a., RNA polymerase sigma factor from Cupriavidus basilensis FW507-4G11

 Score = 66.6 bits (161), Expect = 3e-16
 Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 16/179 (8%)

Query: 15  DEQLMQRYAKGDGKAFEQLYLKHKGALYRYFVRQLGDKQLAEDLYQETWGRVIRAAANYE 74
           D+ L+ R  + D  A  ++  +    +     R LGD   A+D+ QE + R+ + AA ++
Sbjct: 7   DDALLARIGRHDAAAVREMVARKLPRVLALATRMLGDSGEAQDVAQEVFMRLWKHAARWQ 66

Query: 75  PS-AKFNTWLYRIAHNLLIDHVRAVKPVDLVSHDNEEGLDTFVGAEQEQPDVHWQE---- 129
           P  A+F+TWL+R+A NL  D +R  +         E+ ++     EQ  P    +E    
Sbjct: 67  PGRARFDTWLHRVALNLCYDRLRGAR---------EQAMEPV--PEQAAPGAGPEEALDA 115

Query: 130 TQKSLLLKTCIALLPQVQKEAFILNIEMGFTAAVISDIAGVTLEATKSRIRYAYQSLKD 188
             +   +   +A LP  Q+EA +L           + + G+++EA +S +  A ++L+D
Sbjct: 116 AAQGARVGAALAKLPARQREALVLQYYQELPNGEAAALMGISIEALESLLARARRNLRD 174