Pairwise Alignments

Query, 200 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella sp. ANA-3

Subject, 186 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 62.8 bits (151), Expect = 4e-15
 Identities = 49/178 (27%), Positives = 86/178 (48%), Gaps = 6/178 (3%)

Query: 16  EQLMQRYAKGDGKAFEQLYLKHKGALYRYFVRQLGDKQLAEDLYQETWGRVIRAAANYEP 75
           ++L+ R  + D +AF  L  + +  ++R   R L D++ A D+ QET+ +V  +   Y  
Sbjct: 7   QELVSRSQQDDKRAFALLVSEFQPLVFRLAFRLLCDEEEARDITQETFVKVWLSLKTYNQ 66

Query: 76  SAKFNTWLYRIAHNLLIDHVRAVKPVDLVSHDNEEGLDTFVG-AEQEQPDVHWQETQ-KS 133
             + +TWLY+I  N   D +R+++   L   DNE      V     +  ++     Q K 
Sbjct: 67  ENRLSTWLYKITCNTCYDRLRSLRHSPL---DNESAFSDSVNIPSDDHIEISLSNKQLKE 123

Query: 134 LLLKTCIALLPQVQKEAFILNIEMGFTAAVISDIAGVTLEATKSRIRYAYQSLKDCVN 191
           L+L+    L PQ QK  F L        A +  I G++ E  KS +  A +++++ +N
Sbjct: 124 LILRYTNELPPQ-QKLVFTLRDVEELEVAEVQIITGLSPEKIKSTLYLARKNIRNKMN 180