Pairwise Alignments

Query, 200 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella sp. ANA-3

Subject, 196 a.a., putative RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 76.6 bits (187), Expect = 3e-19
 Identities = 60/184 (32%), Positives = 90/184 (48%), Gaps = 11/184 (5%)

Query: 10  AHEHTDEQLMQRYA-KGDGKAFEQLYLKHKGALYRYFVRQLG-DKQLAEDLYQETWGRVI 67
           +H+ TDEQLM+R+A +   KAFE+LY ++      +F+R L  D  LA+D  QE + RV 
Sbjct: 8   SHDETDEQLMERFAFRNSEKAFEELYCRYAPRFKGFFMRMLSADGALADDFLQELFLRVY 67

Query: 68  RAAANYEPSAKFNTWLYRIAHNLLIDHVRAVKPVD----LVSHDNEEGLDTFVGAEQEQP 123
            A  +Y+   +F+TW + +A+NL  +  R    VD      S+ NEE  D++   E E  
Sbjct: 68  EARGSYQHGKQFSTWAFAMAYNLCKNEYRHRDIVDEYRLQQSYTNEE--DSYSSLEFE-- 123

Query: 124 DVHWQETQKSLLLKTCIALLPQVQKEAFILNIEMGFTAAVISDIAGVTLEATKSRIRYAY 183
            V          LK  +A L   Q+ A+ L  E       I+ I        KSR+ Y  
Sbjct: 124 -VAHDRQVFDRQLKKVLAGLTDEQRAAYTLRYEEELPVQEIAQILCCPEGTVKSRLYYTL 182

Query: 184 QSLK 187
           + L+
Sbjct: 183 KVLQ 186