Pairwise Alignments

Query, 200 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella sp. ANA-3

Subject, 182 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 61.2 bits (147), Expect = 1e-14
 Identities = 44/147 (29%), Positives = 76/147 (51%), Gaps = 12/147 (8%)

Query: 28  KAFEQLYLKHKGALYRYFVR-QLGDKQLAEDLYQETWGRVIRAAANYEPSAKFNTWLYRI 86
           +AF+QL  K++  + R+F+    GD +L++DL Q+T+ +     A++   + F+TWLYRI
Sbjct: 20  RAFDQLVQKYQSPVRRFFLHLTCGDSELSDDLAQDTFIKAYTNLASFRNLSSFSTWLYRI 79

Query: 87  AHNLLIDHVRAVKPVDLVSHDNEEGLDTFVGAEQ----EQPDVHWQETQKSLLLKTCIAL 142
           A+N+  D++R+ K  ++   D  E +D     EQ    +  DV+        + +TCI L
Sbjct: 80  AYNIFYDYIRSRK--EMADLDTRE-VDAVNCTEQANIGQTMDVYQSLKSLKEVERTCITL 136

Query: 143 L----PQVQKEAFILNIEMGFTAAVIS 165
                  + K A I  I  G   + +S
Sbjct: 137 FYMEDVSIDKIAGITGIPAGTVKSHLS 163