Pairwise Alignments

Query, 432 a.a., N-acetylglucosamine transporter nagP (from data) from Shewanella sp. ANA-3

Subject, 451 a.a., transporter, major facilitator superfamily from Caulobacter crescentus NA1000

 Score =  145 bits (366), Expect = 2e-39
 Identities = 134/445 (30%), Positives = 210/445 (47%), Gaps = 32/445 (7%)

Query: 3   LDKSQQKSSFLPMAIV--AALFFILGFATWLNGSLMPYLKQILQLNPFQASLILFSFYIA 60
           + K+  K   + +AIV    LFFI    T L   L+  +K +  L P +ASL  F+F+IA
Sbjct: 6   ITKTTAKGGGVKLAIVYVTCLFFIWALVTNLLDPLLKTMKTVFTLTPVEASLTGFAFFIA 65

Query: 61  VTFTALPSAWVIRKVGYKNGMALGMGIMMLAGLLFIPAAKTQIFGLFLCAQLVMGTGQTL 120
               +LPSA  + K+GY   + +G+G ++    + I AAK   FG+FL    V  +G TL
Sbjct: 66  YGIMSLPSAAFLSKLGYARSVMVGLGGIVAGCFIAIAAAKLHTFGVFLVGLFVTASGVTL 125

Query: 121 LQTAVNPYVVRLGPEESAAARVSVMGILNKGAGVIAPLVFSALIL---DSF-KDRIGTTL 176
           LQ A NP +  +G  E ++ R+++    N   G    L F A  L   + F KD + T  
Sbjct: 126 LQVAANPLIASMGKPEESSFRLNLSQAFN-SLGAACGLWFGANFLLKGEIFEKDAVITDA 184

Query: 177 TQVQ-IDEMANSLVFPYLGMAIFIGVLALAVKKSPLPELSNEDEVAEHTDKGQIK---AA 232
            + Q +  ++N  +   LG+A+FI ++ +  +K          E A  T  GQ+     A
Sbjct: 185 MREQALGFVSNVYLAIGLGLALFILLIFMVRQKI--------TEAAPKT--GQLVNPFTA 234

Query: 233 LSHPNLAFGVIALFVYVAVEVIAGDTIGTF-----ALSLGVEHYGVMTSYTMVCMVLGYT 287
           L+      G I +F+YV  EV     +  F      L +  E  G +T++ MV  ++G  
Sbjct: 235 LTSKWANLGAIGIFLYVGAEVAISLHLLLFLEQSHILDISAEQAGKLTTFYMVFAMIGRF 294

Query: 288 LGIILIPRFISQPTALMISAILGLLLTLAILFGDN---NSYAIANALLVPFGGVALPDTL 344
            G  L+ + I     L I A+  + L L ++   +   +++A    LL+    V      
Sbjct: 295 AGSALL-KTIKDYVMLAIVAVGAIALCLVVILTKDMTPSAHAGTVNLLLASAPVTTGLIP 353

Query: 345 LFIAFL-GLANAIVWPAVWPLALSGLGKLTSTGSALLIMGIAGGAFGPLFWGLTSSATDM 403
            F A L GL N+I++P ++ L L      TS  S LL M I GGAF PL +      T  
Sbjct: 354 AFAALLIGLFNSIMFPTIFTLTLQRSSAPTSATSGLLCMAIVGGAFLPLAFAKIEEMTG- 412

Query: 404 GQQGGYMVMLPCYLFILFYAVKGHK 428
               G+   L CY+++L++A+   K
Sbjct: 413 SMAMGFAAPLLCYVYVLWFALVAKK 437