Pairwise Alignments

Query, 432 a.a., N-acetylglucosamine transporter nagP (from data) from Shewanella sp. ANA-3

Subject, 418 a.a., fucose permease (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  146 bits (368), Expect = 1e-39
 Identities = 116/432 (26%), Positives = 202/432 (46%), Gaps = 38/432 (8%)

Query: 13  LPMAIVAALFFILGFATWLNGSLMPYLKQILQLNPFQASLILFSFYIAVTFTALPSAWVI 72
           +P+A+V +LFF+   ++ L  +++  L +  +LN F+AS    ++++A     +P A  +
Sbjct: 8   IPLALVFSLFFLWAISSNLLPTMIRQLMKTCELNTFEASFTETAYWLAYFIFPIPIAMFM 67

Query: 73  RKVGYKNGMALGMGIMMLAGLLFIPAAKTQIFGLFLCAQLVMGTGQTLLQTAVNPYVVRL 132
           ++  YK G+  G+ +  + GLLF PAA  + +  +LC   ++ TG   L+TA NPYV  L
Sbjct: 68  KRYSYKAGIIFGLLLAAVGGLLFFPAAMLKEYWAYLCIFFIIATGMCFLETAANPYVTVL 127

Query: 133 GPEESAAARVSVMGILNKGAGVIAPLVFSALILDSFK--------DRIGTTLTQVQIDEM 184
           G  E+A  R+++    N     IA +  S LIL            D  G     +Q++  
Sbjct: 128 GAPETAPRRLNLAQSFNGLGAFIAAMFLSKLILSGTHYTRETLPVDYPGGWQAYIQLE-- 185

Query: 185 ANSLVFPYLGMAIFIGVLALAVKKSPLPELSNEDEVAEHTDKGQIKA----ALSHPNLAF 240
            +++  PYL +A+ +  +A+    S LP++   DE AE     + K      L   +L +
Sbjct: 186 TDAMKLPYLILALLLLAIAVVFVFSKLPKIG--DEGAEPASGKKEKLIDFDVLKRSHLRW 243

Query: 241 GVIALFVYVAVEVIAGDTIGTFALSLGVEHYGVMTSY---TMVCMVLGYTLGIILIPRFI 297
           GVIA F Y   +         +  +         T++    M+  +LG  +G  L+ +F 
Sbjct: 244 GVIAQFFYNGGQTAINSLFLVYCCTYAGLPEDTATTFFGLYMLAFLLGRWIGTGLMVKFR 303

Query: 298 SQPTALMISAILGLLLTLAILFGDNNSYAIANALLVPFGGVALPDTLLFIAFLGLANAIV 357
            Q   L++ A++ +LL   ++                +GG+     +L I+F     +I+
Sbjct: 304 PQ-GMLLVYALMNILLCGVVML---------------WGGMIGLYAMLAISFF---MSIM 344

Query: 358 WPAVWPLALSGLGKLTSTGSALLIMGIAGGAFGPLFWGLTSSATDMGQQGGYMVMLPCYL 417
           +P  + LAL GLG  T +GSA L+M I G A  P          +      Y + + C+ 
Sbjct: 345 YPTQFSLALKGLGNQTKSGSAFLVMAIVGNACLPQLTAYFMHVNEHIYYVAYGIPMICFA 404

Query: 418 FILFYAVKGHKM 429
           F  +Y  KG+K+
Sbjct: 405 FCAYYGWKGYKV 416