Pairwise Alignments

Query, 366 a.a., general secretion pathway protein B (RefSeq) from Shewanella sp. ANA-3

Subject, 368 a.a., general secretion pathway protein B (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  486 bits (1250), Expect = e-142
 Identities = 261/369 (70%), Positives = 292/369 (79%), Gaps = 4/369 (1%)

Query: 1   MSILLDAVTRNKQQQTSPLPDAVLTPRASYPTARKSAFPVAKLSLLAVAVALGVGVAWGV 60
           MSILLDAVTRNKQQQ+S LPDAVLTPR SYPT RK+AFPVAKLSLLAVA+ALGVG AWGV
Sbjct: 1   MSILLDAVTRNKQQQSSALPDAVLTPRPSYPTPRKAAFPVAKLSLLAVAIALGVGGAWGV 60

Query: 61  ANWQQQNSMPIVNAAPS-TINPSMADTKVENTPQTASSVQPSAEGVRA--SSGAVTNAAL 117
           ANWQQ +SM ++ A  +   N        E+  +T S    +   +    S  A +   +
Sbjct: 61  ANWQQSSSMAVLKANDAHKSNTYQGAVIAEHASKTGSDAVVTQTQINRELSVSATSEPEV 120

Query: 118 QTGGSEQTTAESSGFRLAGKVALPREQVLNEAPANVQPYLSSNMSSIPAATASASTSADP 177
                 Q    ++GFRLAGKVALPREQVLNE P ++Q Y++SNMSS    +A+ +T+ DP
Sbjct: 121 SPDTLPQGARGTAGFRLAGKVALPREQVLNEQPLSMQGYVNSNMSSAQTLSANPATT-DP 179

Query: 178 SYDDYLATSAALDETTRTQQSSVEDVAPQDTSESEPIMLGANANRQGLATLEALREQVNA 237
           SYDDYLATSAALDET R Q S    V PQ+ +E EPIMLGA+AN QGLATLEALR+QVNA
Sbjct: 180 SYDDYLATSAALDETVRRQSSMENMVEPQEVAEPEPIMLGASANGQGLATLEALRQQVNA 239

Query: 238 AAADVGLETAQSRKEDELVANFQDALKDVEYVKAAKTPVTEPKLDPIPKVENDDIPKYGQ 297
           AA DVGL+T QSRK+DELVA FQDALKDVEYV AAKTPVTEPKLDPIPK ENDDIPKYGQ
Sbjct: 240 AAVDVGLDTTQSRKDDELVATFQDALKDVEYVNAAKTPVTEPKLDPIPKTENDDIPKYGQ 299

Query: 298 LPAGLQLQVPEFNIVAHVYSTDASQRWLNVDGAELQEGDQIGGKLKIIAIRPRDVVLEIQ 357
           LPAGLQLQVPEFNIVAHVYSTDASQRWLNVDGAELQEGD I GKLKIIAIRPRD+VL+IQ
Sbjct: 300 LPAGLQLQVPEFNIVAHVYSTDASQRWLNVDGAELQEGDMIVGKLKIIAIRPRDIVLDIQ 359

Query: 358 GTQFRVPAI 366
           GTQFRVPAI
Sbjct: 360 GTQFRVPAI 368