Pairwise Alignments

Query, 530 a.a., N-6 DNA methylase (RefSeq) from Shewanella sp. ANA-3

Subject, 517 a.a., Type I restriction enzyme EcoR124II M protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 90.1 bits (222), Expect = 2e-22
 Identities = 89/345 (25%), Positives = 138/345 (40%), Gaps = 46/345 (13%)

Query: 126 LEQITKTLDQIDW---FSAKRDGLGDLYEGLLEKNASETKSGAGQYFTPRVL--INSMVR 180
           +  +   LD I++    S + D LGD YE ++ + A+     AG+++TP+ +  I + + 
Sbjct: 159 VSNVLLALDDINFGLEASQEIDILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIV 218

Query: 181 CIKPQAGEYIQDPAAGTAGFLIAAHEYIKAQPEYDDLSLKQIDFQRYHAYVGVELVPNTR 240
            I  Q    + DP  G+   L+ A     A   Y                 G E  P T 
Sbjct: 219 AIGHQRLRNVYDPTCGSGSLLLRAASIGNAVDIY-----------------GQEKNPTTY 261

Query: 241 RLALMNCLLHGMEGDDDGVVHLGNALGNVGQSLKPADVILANPPFGTSKGGEASITRDDL 300
            LA MN LLHG+   +  + + G+ L          D ++ANPPF            DD 
Sbjct: 262 NLARMNMLLHGIRFSNFKIEN-GDTLEWDAFGDTQFDAVVANPPFSAEWSAADKFNTDD- 319

Query: 301 TFDTSNK-------QLAFLQHIYRNLKPGGRAAVVLPDNVLFEAGKGTDIRRDLMDKCN- 352
            F  + +         AF+ H+  +L  GG  A V P  VLF       IRR L++K N 
Sbjct: 320 RFSKAGRLAPRKTADYAFILHMIYHLNEGGTMACVAPHGVLFRGNAEGVIRRFLIEKKNY 379

Query: 353 LHTILRLPTGIFYAQGVKTNVLFFTKGSAKDKHQQEQCTENVWVYDLRTNMPSFGKRTPF 412
           +  I+ LP  IFY   + T +L F K   +D        +N+   D          +   
Sbjct: 380 VDAIIGLPANIFYGTSIPTCILVFKKCRKED--------DNILFIDASKEFEKVKTQNKL 431

Query: 413 SDNHLAPFEQVYGEHAGGLSPRTEGEYSFGAEQVEIADTDENQGV 457
            + H+    + Y +       +   +YS  A   EIA+ D N  +
Sbjct: 432 REQHIQKIVETYRDR------KEIEKYSHLASLQEIAENDYNLNI 470