Pairwise Alignments

Query, 293 a.a., farnesyl-diphosphate synthase (RefSeq) from Shewanella sp. ANA-3

Subject, 305 a.a., Polyprenyl synthetase (NCBI) from Rhodospirillum rubrum S1H

 Score =  236 bits (601), Expect = 6e-67
 Identities = 132/288 (45%), Positives = 180/288 (62%), Gaps = 8/288 (2%)

Query: 11  LRVDDQLKQRFSTLEDTAPQLKAAMTHGALLGGKRIRPFLVYSVGQMFGVPLEKLDASAA 70
           L ++D L Q     +    ++  AM + AL GGKR+RPFLV    Q+F V        AA
Sbjct: 19  LAINDHLSQLMPATDGPEGRVVDAMRYAALEGGKRLRPFLVLQSAQLFSVSRACALNVAA 78

Query: 71  AIECIHAYSLIHDDLPAMDDDDLRRGQPTVHIAFDEATAILAGDALQTLAFEIVTEAVPG 130
           AIE IH YSLIHDDLPAMD+DDLRRG+PTVH  +DE TAILAGDAL T AFE++  A+PG
Sbjct: 79  AIEMIHCYSLIHDDLPAMDNDDLRRGRPTVHRQYDEPTAILAGDALLTKAFEVI--ALPG 136

Query: 131 ISSEQHIA--MVRALAKASGYRGMCGGQAIDLAST----DKLIDLKALTQLHNMKTGALI 184
             S+  +   +V  LA A+G +GM GGQ IDL +     D  +D+ A+T++H +KTG LI
Sbjct: 137 THSDPAVRCDLVTELAIAAGAKGMVGGQMIDLMAERGLIDGALDVPAITRMHQLKTGRLI 196

Query: 185 SCAVELALIAANAPKDEYQTMMEFAHAVGLAFQVQDDILDIIATTEELGKPQGSDAESNK 244
           S +     I   AP+ + Q +  +AH +GLAFQ+ DD+LD+   T  LGK  G D  S K
Sbjct: 197 SFSSIAGAILGKAPRSQRQALFNYAHDLGLAFQIADDLLDVEGDTATLGKTAGKDEASGK 256

Query: 245 STFPQLLGLQGAKDTAAQLIQEALSALAKLPYNSQLIADFARYIIERR 292
           STF  LLGL+ A+D A  L ++A++ L      + L+   AR++++R+
Sbjct: 257 STFVSLLGLERARDQADMLAEQAVNHLDAFDEKADLLRAVARFVVDRK 304