Pairwise Alignments

Query, 293 a.a., farnesyl-diphosphate synthase (RefSeq) from Shewanella sp. ANA-3

Subject, 303 a.a., Geranylgeranyl pyrophosphate synthase from Sphingomonas koreensis DSMZ 15582

 Score =  230 bits (586), Expect = 3e-65
 Identities = 125/290 (43%), Positives = 170/290 (58%)

Query: 2   LVNAIKEYQLRVDDQLKQRFSTLEDTAPQLKAAMTHGALLGGKRIRPFLVYSVGQMFGVP 61
           L +A+++    +D Q         D   +L AAM H A+ GGKR+RP L ++   +F V 
Sbjct: 12  LESAMRDVAEEIDRQFDLLLPVPADPRARLYAAMRHAAIGGGKRLRPLLTFASASLFAVD 71

Query: 62  LEKLDASAAAIECIHAYSLIHDDLPAMDDDDLRRGQPTVHIAFDEATAILAGDALQTLAF 121
                 +A A+ECIH YSLIHDDLPAMD+DDLRRG+PTVH AFDEATAILAGD L  LAF
Sbjct: 72  PACASRAAIAVECIHVYSLIHDDLPAMDNDDLRRGKPTVHRAFDEATAILAGDCLHALAF 131

Query: 122 EIVTEAVPGISSEQHIAMVRALAKASGYRGMCGGQAIDLASTDKLIDLKALTQLHNMKTG 181
           E++ +          + +V  LA+A+G  GM GGQ +DL +     DL  +T+   +KTG
Sbjct: 132 EVLADPATHADPFVRVELVTELARAAGPVGMAGGQMMDLIAEQSSFDLATVTRCQALKTG 191

Query: 182 ALISCAVELALIAANAPKDEYQTMMEFAHAVGLAFQVQDDILDIIATTEELGKPQGSDAE 241
           ALIS AVE   I    P +    +  +A  +GLAFQ+ DD+LD     E  GK    DA+
Sbjct: 192 ALISWAVEAGAILGRVPPEGRTGLRGYARDIGLAFQIADDLLDAEGDEEAAGKKLRKDAD 251

Query: 242 SNKSTFPQLLGLQGAKDTAAQLIQEALSALAKLPYNSQLIADFARYIIER 291
           + K TF  LLG + A+  A  L+ +A++ L      + L+ D ARY++ER
Sbjct: 252 AGKETFLTLLGPERARAQAGLLVDQAIAHLHAFGAEADLLRDIARYVLER 301