Pairwise Alignments

Query, 1082 a.a., SNF2-related protein (RefSeq) from Shewanella sp. ANA-3

Subject, 968 a.a., RNA polymerase-associated protein HepA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 54.7 bits (130), Expect = 3e-11
 Identities = 106/472 (22%), Positives = 202/472 (42%), Gaps = 68/472 (14%)

Query: 640  ILADDMGLGKTIQTLAFLLKQQEAKSVGQPRLPSLIICPTSLVGNWAKEAAKFAPSLTLA 699
            +LAD++GLGKTI+  A L+  Q+  +    R+  LII P +L   W  E  +   +L  +
Sbjct: 173  LLADEVGLGKTIE--AGLIIHQQLLTCRAERV--LIIVPDTLRHQWLVEMLRRF-NLRFS 227

Query: 700  VIHGAQRGPLLSRLSEFDVVVTTYPLMVRDYDYYQAQP---------FEHIVLDEAQQIK 750
            V         +   ++ D    T  L++   +  + +          ++ +V+DEA  ++
Sbjct: 228  VF---DEDRCVEAFADHDNPFYTEQLVICSLELLRKKKRLDQALDADWDLLVVDEAHHLE 284

Query: 751  ---NAQAKVSQQIKALQ--APFRLCLTGTP----LENHLGELKSL-----MDFCLPGLLG 796
                A ++  Q ++AL    P  L LT TP     E+H   L+ L      D+    L  
Sbjct: 285  WTEEAPSRAYQVVEALSEVVPGVLLLTATPDQLGHESHFARLRLLDPDRFYDYDA-FLAE 343

Query: 797  TTAYFNKAF-------RYRIERYGDSEQAKVLSQR-IAPFVLRRTKAEVVTELPP--KTE 846
              +Y + A          ++  Y  +   ++LS++ IAP +       + +EL    ++E
Sbjct: 344  ENSYKDVAIAAEALAGESKLSDYAINSLTELLSEKDIAPSIRLIQAEGIDSELQQAARSE 403

Query: 847  ILQTL-ELEKDQRNLYESIRLSMEKKIRELFAT-------QGVAGSHIEFLDALLKLRQA 898
            +LQ L +     R LY + R S++   + +F         Q +  + +  +    K  +A
Sbjct: 404  LLQELLDRHGTGRVLYRNSRASVKGFPKRIFNAYPHAMPEQYLTAARVNDMMGGRKSLEA 463

Query: 899  CCDPRLVKLEQAQKVKNNA--------KLNWLNQNLPEMVQEGRKILIFSQFTSMLLLIE 950
                 L   +  Q+ ++N+        +++WL + L       +K+LI +      L +E
Sbjct: 464  KAAQALSPEKLYQEFEDNSASWWKFDPRVDWLIEFLKS--HRSKKVLIIASGADTALSLE 521

Query: 951  ELLQS-----LNIDYSKLTGQTRLRQGQIDKFQEGDTPVFLISLKAGGTGLNLTAADTVI 1005
            E L++       + +  ++   R + G     +EG     + S + G  G N   A  ++
Sbjct: 522  EALRTREGIQATVFHEGMSIIERDKAGAYFAQEEGGAQALICS-EIGSEGRNFQFASHLV 580

Query: 1006 HYDPWWNPAAEKQATDRAHRIGQENPVFVYKLIAEGTVEEKIQEMQQHKQGL 1057
             +D   NP   +Q   R  RIGQ+N + ++    + T +E++  +Q + QGL
Sbjct: 581  LFDLPLNPDLLEQRIGRLDRIGQKNDIQIHLPYLQDTAQERL--LQWYHQGL 630