Pairwise Alignments

Query, 385 a.a., Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) (from data) from Shewanella sp. ANA-3

Subject, 379 a.a., 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) from Pseudomonas stutzeri RCH2

 Score =  313 bits (803), Expect = 4e-90
 Identities = 165/373 (44%), Positives = 239/373 (64%), Gaps = 3/373 (0%)

Query: 6   NEDQRQFADLARQFAADELAPFAAKWDEEHHFPKDVIQKAGELGFCSLYSPESEGGMGLS 65
           NEDQ   A++ARQFA + L PFA +W  EH +P + I +   LGF  +  PE  GG    
Sbjct: 4   NEDQNAIAEMARQFAQERLKPFAEQWSREHRYPAEAIGEMAALGFFGMLVPEQWGGSDTG 63

Query: 66  RLDASIIFEELSKGCTATTAMLTIHNMATWM-VTTWGTDTLRQAWSEPLTTGQMLASYCL 124
            L  ++  EE++ G  A + ++++HN    + +  +G +  +  +  PL  G+ + ++ L
Sbjct: 64  YLAYAMALEEIAAGDGACSTIMSVHNSVGCVPILRFGNEQQKSDFLTPLARGEQIGAFAL 123

Query: 125 TEPGAGSDAASLQTKAVREGDEYVVSGSKMFI-SGAGSTELLVVMCRTGQAGPKGISAIA 183
           TEP AGSDA+SL+T+A R+GD YV++G+K FI SG  +  ++V       AG  GISA  
Sbjct: 124 TEPQAGSDASSLRTRARRDGDHYVLNGAKQFITSGKHAGTVIVFAVTDPDAGKGGISAFI 183

Query: 184 IPADSEGIIYGKAEDKMGWNAQPTRLVTFDNVRVPVANLLGEEGQGFTFAMKGLDGGRIN 243
           +P DS G    + EDK+G +A  T  + F+++RVPVAN LGEEG+G+  A+  L+GGRI 
Sbjct: 184 VPTDSPGYQVVRVEDKLGQHASDTCQIAFEDLRVPVANRLGEEGEGYRIALANLEGGRIG 243

Query: 244 IATCSVGTAQAALERATQYMNERQQFGKPLAAFQALQFKLADMATELVAARQMVRLAAFK 303
           IA  +VG A+AA E A  Y  +R+ FGKP+   QA+ F+LADMAT++  ARQMV  AA  
Sbjct: 244 IAAQAVGMARAAFEAARDYARDRETFGKPIIEHQAVAFRLADMATQIAVARQMVHHAAAL 303

Query: 304 LDSGDPEATAYCAMAKRFATDVGFQVCDAALQIHGGYGYIREYPLERHFRDVRVHQILEG 363
            + G P A    +MAK FA+++  +VC AA+Q  GGYGY+ ++P+ER +RDVRV QI EG
Sbjct: 304 REVGRP-ALVEASMAKLFASEMAEKVCSAAIQTLGGYGYLADFPVERIYRDVRVCQIYEG 362

Query: 364 TNEIMRLIIARRL 376
           T++I RL+I+R L
Sbjct: 363 TSDIQRLVISRNL 375