Pairwise Alignments

Query, 167 a.a., integrase catalytic subunit (RefSeq) from Shewanella sp. ANA-3

Subject, 269 a.a., ISSod1, transposase OrfB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  146 bits (369), Expect = 2e-40
 Identities = 72/152 (47%), Positives = 100/152 (65%), Gaps = 1/152 (0%)

Query: 3   WVTDITYIKTHEGWLYLGAVMDLFSRRIIGWSMGSRITKELALDALLMAVWRRKPTGKVL 62
           W  D+TY+KT EGW+YL  VMDL+SRRI+GW +  R+T +L   AL+ A   R+P   ++
Sbjct: 109 WAGDVTYLKTGEGWMYLAVVMDLYSRRIVGWRIDKRMTTDLISKALIKAYNLRQPARGLV 168

Query: 63  VHSDQGSQYTSHDWSEFLTAHGLEGSMSRRGSCHDNAVAESFFQLLKRERIKRKIYSTRE 122
            HSD+GSQYTS  +   L+++G+  SM   G+C DNAV E FF  LK + I +    TRE
Sbjct: 169 FHSDRGSQYTSKQFGRLLSSYGIRASMGDVGACWDNAVVERFFGSLKHDWIFKVAQPTRE 228

Query: 123 AAKSDIFNYIDMFYNPKRQHSSNHGLSPLEYE 154
             K D+  YI  +YN +R HS+N+ LSP+E+E
Sbjct: 229 FMKQDVTAYI-KYYNLERLHSANNDLSPVEFE 259