Pairwise Alignments

Query, 241 a.a., RNA methyltransferase (RefSeq) from Shewanella sp. ANA-3

Subject, 399 a.a., TrmJ/YjtD family RNA methyltransferase from Rhodopseudomonas palustris CGA009

 Score =  123 bits (308), Expect = 6e-33
 Identities = 89/235 (37%), Positives = 126/235 (53%), Gaps = 13/235 (5%)

Query: 7   VILVGTSHPGNIGSTARAMKTMGLSTLYLAEPRCEVDG-QSIAL---AAGASDILKHLVK 62
           VILV      NIG  ARAM   GL+ L L +PR   DG  +IA    AAGA  IL  +  
Sbjct: 20  VILVEPQLGENIGMCARAMGNFGLTRLRLVKPR---DGWPNIAAQRSAAGADHILNAVEL 76

Query: 63  VDSLEEAIADCSLVIATSARSRTLDWPMLDPREAGQKLVTEGLTG-PVAIVFGRENHGLT 121
            DS+ EA+ DC+L+ AT+AR+     P+  P  A Q++V E  +G    I+FGRE HGL 
Sbjct: 77  FDSVAEAVKDCTLLFATTARAHDQAKPVRGPEAAAQEIVVETASGGTTGIMFGRERHGLE 136

Query: 122 NEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQTEAP-QVEEEYPLSA--D 178
           N+E+      V  P NP ++SLNLAQAV ++ YE    H  Q   P ++ E  P ++   
Sbjct: 137 NDEVALANRIVTFPVNPAFASLNLAQAVLLMGYEW-FKHATQNALPYEMPERSPRASQHQ 195

Query: 179 LERFFVHLESTLSSTGFIIKNHPGQVM-TKLRRLFSRARIESQEMNILRGILTSI 232
           ++ FF +L + L    F+        M   LR +F+R     Q+M+ L G++ +I
Sbjct: 196 IDAFFSNLVAELDRVEFLRPPEKRDTMLVNLRNIFTRMEPSKQDMHTLHGVVMAI 250