Pairwise Alignments

Query, 313 a.a., L-arabinose ABC transporter, substrate-binding component AraU (from data) from Shewanella sp. ANA-3

Subject, 308 a.a., Inositol transport system sugar-binding protein from Pseudomonas fluorescens FW300-N2E2

 Score =  144 bits (363), Expect = 3e-39
 Identities = 104/283 (36%), Positives = 145/283 (51%), Gaps = 11/283 (3%)

Query: 9   ALGLWAVSATCAYATTVGFSQVGSESGWRTSFSEAVKAEAKQR--GIDLKFADAQQKQEN 66
           AL L   S        +G S    +  W T   E++  +AK    G+ L+F DA+     
Sbjct: 11  ALSLMLTSGAALADLKIGVSMSQFDDTWLTYLRESMDKKAKSLPDGVTLQFEDARSDVVK 70

Query: 67  QIKAVRSFIAQGVDAIIIAPVVETGWKPVLKEAKRAKIPVVIVDRNIKVDDDSL--FLTR 124
           Q+  V SFI+Q VDAII+ PV     + + K A  A IP+V V+R  + DD  L   +  
Sbjct: 71  QLSQVESFISQKVDAIIVNPVDTAATQRITKAAVAAGIPLVYVNR--RPDDLKLPAGVVT 128

Query: 125 IASDFSEEGRKIGQWLMDKTQGNCDIAELQGTVGATAAIDRAAGFNQVIANYPNAKIVRS 184
           +ASD  E GR   Q+L +K  G  DI  L G +   +  +R  G   V+A YPN KI + 
Sbjct: 129 VASDDLEAGRMQMQYLAEKMGGKGDIVILLGDLANNSTTNRTKGVKDVLAKYPNIKIEQE 188

Query: 185 QTGEFTRAKGKEVMEGFLKAQNGQPLCAVWSHNDEMALGAVQAIKEAGLKPGKDILIVSV 244
           QTG + R KG  ++  +L    G+   AV ++NDEMA+GA  A+K+AG K G  +LI  V
Sbjct: 189 QTGTWLRDKGMTLVNDWL--TQGREFQAVVANNDEMAIGAAMALKQAGTKKG-SVLIAGV 245

Query: 245 DGVPDYFKAMADGDVNATVELSPYLGGPAFDAIDAYLKGNKDQ 287
           DG PD   A+  GD+   V +     G A  +ID  +K  K Q
Sbjct: 246 DGTPDGLNAIKKGDM--AVSVFQDAKGQADGSIDTAVKMVKKQ 286