Pairwise Alignments

Query, 313 a.a., L-arabinose ABC transporter, substrate-binding component AraU (from data) from Shewanella sp. ANA-3

Subject, 308 a.a., rhizopine-binding protein from Pseudomonas fluorescens FW300-N2C3

 Score =  136 bits (343), Expect = 6e-37
 Identities = 99/283 (34%), Positives = 144/283 (50%), Gaps = 11/283 (3%)

Query: 9   ALGLWAVSATCAYATTVGFSQVGSESGWRTSFSEAVKAEAKQR--GIDLKFADAQQKQEN 66
           AL L   S        +G S    +  W T   E++  +AK    G+ L+F DA+     
Sbjct: 11  ALSLMLTSGAALADLKIGVSMSQFDDTWLTYLRESMDKKAKSLPDGVTLQFEDARSDVVK 70

Query: 67  QIKAVRSFIAQGVDAIIIAPVVETGWKPVLKEAKRAKIPVVIVDRNIKVDDDSL--FLTR 124
           Q+  V SFI+Q VDA+I+ PV     + + K A  A IP+V V+R  + DD  L   +  
Sbjct: 71  QLSQVESFISQKVDALIVNPVDTAATQRITKAAVAAGIPLVYVNR--RPDDPKLPEGVVT 128

Query: 125 IASDFSEEGRKIGQWLMDKTQGNCDIAELQGTVGATAAIDRAAGFNQVIANYPNAKIVRS 184
           +ASD  E GR   Q+L +K  G  +I  L G +   +  +R  G   V+A YP  KI + 
Sbjct: 129 VASDDLEAGRMQMQYLAEKMGGKGNIVILLGDLANNSTANRTKGVKDVLAKYPGIKIEQE 188

Query: 185 QTGEFTRAKGKEVMEGFLKAQNGQPLCAVWSHNDEMALGAVQAIKEAGLKPGKDILIVSV 244
           QTG + R KG  ++  +L    G+   AV ++NDEMA+GA  A+K+AG + G  +LI  V
Sbjct: 189 QTGIWLRDKGMTLVNDWL--TQGREFQAVVANNDEMAIGAAMALKQAGTEKG-SVLIAGV 245

Query: 245 DGVPDYFKAMADGDVNATVELSPYLGGPAFDAIDAYLKGNKDQ 287
           DG PD   A+  G++   V +     G A  +ID  +K  K Q
Sbjct: 246 DGTPDGLNAIKKGEM--AVSVFQDAKGQADGSIDTAVKMVKKQ 286