Pairwise Alignments

Query, 313 a.a., L-arabinose ABC transporter, substrate-binding component AraU (from data) from Shewanella sp. ANA-3

Subject, 308 a.a., rhizopine-binding protein from Pseudomonas fluorescens FW300-N2E3

 Score =  147 bits (372), Expect = 2e-40
 Identities = 99/283 (34%), Positives = 153/283 (54%), Gaps = 11/283 (3%)

Query: 9   ALGLWAVSATCAYATTVGFSQVGSESGWRTSFSEAVKAEAKQR--GIDLKFADAQQKQEN 66
           AL L   S        +G S    +  W T   E++  +AK    G+ L+F DA+     
Sbjct: 11  ALSLMLASGAALADLRIGVSMSQFDDTWLTYLRESMDKQAKSMPDGVKLQFEDARSDVVK 70

Query: 67  QIKAVRSFIAQGVDAIIIAPVVETGWKPVLKEAKRAKIPVVIVDRNIKVDDDSL--FLTR 124
           Q+  V SFI+Q VDAI++ PV     + + + A +A IP+V V+R  + DD  L   +  
Sbjct: 71  QLSQVESFISQKVDAIVVNPVDTAATRKITEAAVKAGIPLVYVNR--RPDDLKLPKGVIT 128

Query: 125 IASDFSEEGRKIGQWLMDKTQGNCDIAELQGTVGATAAIDRAAGFNQVIANYPNAKIVRS 184
           +AS+  E G+   Q+L +K +G  DI  L G +   +  +R  G  +V+A YP  KI + 
Sbjct: 129 VASNDLEAGQMQMQYLAEKMKGKGDIVILLGDLANNSTTNRTKGVKEVLAKYPGIKIDQE 188

Query: 185 QTGEFTRAKGKEVMEGFLKAQNGQPLCAVWSHNDEMALGAVQAIKEAGLKPGKDILIVSV 244
           QTG ++R KG  ++  +L    G+   A+ S+NDEMA+GA  A+K+AG++ G  +LI  V
Sbjct: 189 QTGTWSRDKGMTLVNDWL--TQGRKFDAIVSNNDEMAIGAAMALKQAGVEKG-SVLIAGV 245

Query: 245 DGVPDYFKAMADGDVNATVELSPYLGGPAFDAIDAYLKGNKDQ 287
           DG PD  +A+  GD+   V +     G A D+IDA +K  K++
Sbjct: 246 DGTPDGLRAVKKGDL--AVSVFQDANGQAVDSIDAAVKMAKNE 286