Pairwise Alignments

Query, 313 a.a., L-arabinose ABC transporter, substrate-binding component AraU (from data) from Shewanella sp. ANA-3

Subject, 322 a.a., Putative sugar ABC transport system, periplasmic binding protein YtfQ precursor from Acidovorax sp. GW101-3H11

 Score =  315 bits (806), Expect = 1e-90
 Identities = 170/322 (52%), Positives = 223/322 (69%), Gaps = 13/322 (4%)

Query: 1   MKHNKIITALGLWAVSATCAYATT--------VGFSQVGSESGWRTSFSEAVKAEAKQRG 52
           MK N+   A  L +V       +T        +GFSQVG+ES WRT+ +E++K+ AK+ G
Sbjct: 2   MKMNRRTVAAALASVPVAALLPSTAWAQKPLVLGFSQVGAESEWRTANTESIKSAAKEAG 61

Query: 53  IDLKFADAQQKQENQIKAVRSFIAQGVDAIIIAPVVETGWKPVLKEAKRAKIPVVIVDRN 112
           I+LKF+DAQQKQENQIKA+RSFIAQ VD I  +PVVE+GW+PVL+EAK AKIPVV+ DR 
Sbjct: 62  IELKFSDAQQKQENQIKAIRSFIAQKVDVIAFSPVVESGWEPVLREAKAAKIPVVLTDRA 121

Query: 113 IKVDDDSLFLTRIASDFSEEGRKIGQWLMDK---TQGNCDIAELQGTVGATAAIDRAAGF 169
           +   D SL++T + SDF EEGRK G+WL++K    +G  +I ELQGTVG+  AIDR  GF
Sbjct: 122 VNTKDTSLYVTFMGSDFVEEGRKAGRWLVEKMKDQKGEVNIVELQGTVGSAPAIDRKKGF 181

Query: 170 NQVIANYPNAKIVRSQTGEFTRAKGKEVMEGFLKAQNGQPLCAVWSHNDEMALGAVQAIK 229
            ++I   P  KI+RSQTG+FTRAKGKEVME FLKA+ G+ +  +++HND+MA+GA+QAI+
Sbjct: 182 EEIIKADPKFKIIRSQTGDFTRAKGKEVMEAFLKAE-GKKINVLYAHNDDMAIGAIQAIE 240

Query: 230 EAGLKPGKDILIVSVDGVPDYFKAMADGDVNATVELSPYLGGPAFDAIDAYLKGNKDQAK 289
           EAG+KP KDI+I+S+D V   F+AM  G +N +VE SP L GP   A    +K  K   K
Sbjct: 241 EAGMKPAKDIVIISIDAVKGAFEAMIAGKLNVSVECSPLL-GPQLMAAVKDIKAGKAVPK 299

Query: 290 LISTTGDVFTQETAAAEYEKRR 311
            I T   +F  E AA E   R+
Sbjct: 300 RIVTEEGIFPMEVAAKEMPNRK 321