Pairwise Alignments

Query, 313 a.a., L-arabinose ABC transporter, substrate-binding component AraU (from data) from Shewanella sp. ANA-3

Subject, 318 a.a., ABC transporter substrate-binding protein from Rahnella sp. WP5

 Score =  338 bits (866), Expect = 1e-97
 Identities = 171/297 (57%), Positives = 218/297 (73%), Gaps = 2/297 (0%)

Query: 17  ATCAYATTVGFSQVGSESGWRTSFSEAVKAEAKQRGIDLKFADAQQKQENQIKAVRSFIA 76
           A  A    VGFSQ+GSESGWR++ ++  K+EA++RGI LK +DAQQKQENQIKA+RSFIA
Sbjct: 18  AVQAAPLVVGFSQIGSESGWRSAETKVSKSEAEKRGITLKISDAQQKQENQIKAIRSFIA 77

Query: 77  QGVDAIIIAPVVETGWKPVLKEAKRAKIPVVIVDRNIKVDDDSLFLTRIASDFSEEGRKI 136
           QGVDAI IAPVV TGW PVL EAK AKIPV ++DR I+V D SL+   +ASD   EG+  
Sbjct: 78  QGVDAIFIAPVVATGWAPVLTEAKEAKIPVFLLDRTIEVSDPSLYTAAVASDSVYEGKVA 137

Query: 137 GQWLMDKTQGN-CDIAELQGTVGATAAIDRAAGFNQVIANYPNAKIVRSQTGEFTRAKGK 195
           G WL+    G  C++ ELQGTVGA+ A++R  GF   +   PN KI+RSQ+G+FTR+KGK
Sbjct: 138 GDWLVKDAAGKPCNVVELQGTVGASVALNRKQGFADALKAAPNVKIIRSQSGDFTRSKGK 197

Query: 196 EVMEGFLKA-QNGQPLCAVWSHNDEMALGAVQAIKEAGLKPGKDILIVSVDGVPDYFKAM 254
           EVME F+KA QNG+ +CAV++HND+MA+GA+QAIKEAGLKPG  I IVS+DGVPD +KAM
Sbjct: 198 EVMESFIKAEQNGKNICAVYAHNDDMAIGAIQAIKEAGLKPGSQIKIVSIDGVPDIYKAM 257

Query: 255 ADGDVNATVELSPYLGGPAFDAIDAYLKGNKDQAKLISTTGDVFTQETAAAEYEKRR 311
             G+ NA+VEL+P + GPAFDA+ A  K      K I T   +   + A  EY+ ++
Sbjct: 258 LAGEANASVELTPNMAGPAFDALIAMKKDGTQPKKFIQTQSALILPDMAQKEYDMKK 314