Pairwise Alignments

Query, 658 a.a., ATP-dependent DNA helicase RecQ (RefSeq) from Shewanella sp. ANA-3

Subject, 634 a.a., ATP-dependent DNA helicase recQ (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  261 bits (668), Expect = 5e-74
 Identities = 178/586 (30%), Positives = 293/586 (50%), Gaps = 24/586 (4%)

Query: 14  YASLLQQQFGFDGFRQGQHEVVSQLLSGHSSLAIFPTGSGKSLCYQFTALQLPHLTLVVS 73
           Y  +L+Q +G+D FR  Q E+++ +  G  +L + PTG GKS+ +Q  AL    + +V++
Sbjct: 4   YQEILKQYWGYDSFRDLQEEIITSIGEGKDTLGLMPTGGGKSITFQVPALAQEGICIVIT 63

Query: 74  PLLALIKDQLSFLHEKGIKAASIDSTLTPELTQQVMRDARYGELKLLMVSVERFKNERFR 133
           PL+AL+KDQ+  L ++ IKA +I S +T +     + +  +G  K L +S ER   E FR
Sbjct: 64  PLIALMKDQVQNLRKREIKALAIYSGMTRQEILTALENCIFGNYKFLYISPERLDTEIFR 123

Query: 134 QFIQSIPISMLVVDEAHCISEWGHNFRPDYLKLPDYRRELAIPLVLLLTATATRKVKLDM 193
             ++S+ +SM+ VDE+HCIS+WG++FRP YLK+ + R  L    VL LTATAT +V  D+
Sbjct: 124 TKLRSMKVSMITVDESHCISQWGYDFRPAYLKIAEIRELLPEVPVLALTATATPEVVTDI 183

Query: 194 AARFDIKPQHIVQTGFYRSNLDLTVLPVASQHKLTALQQQLNLFTGTGIVYVTLQHTAED 253
            AR   +  ++ +  F R NL   V    + +K   L   L   +G+ I+YV  +   ++
Sbjct: 184 QARLKFREGNVFRMSFERKNLAYIVR--KTDNKTKELLYILQRISGSAIIYVRNRRRTKE 241

Query: 254 VAAKLCQMGFDASAYHAGFEDEKRQQIQQDFMQGKIRIVVATIAFGMGIDKSNIRFVVHY 313
           +   L   G  A  YHAG ++  +   Q+ +  G++R++VAT AFGMGIDK ++R V+H 
Sbjct: 242 ITELLMNEGITADFYHAGLDNAVKDLRQKRWQSGEVRVMVATNAFGMGIDKPDVRIVLHL 301

Query: 314 DLPKSIENYCQEIGRAGRDGLLSHCVTLANLDGINTVENFVYGDTPELASIAAVIDNIRE 373
           DLP S E Y QE GRAGRDG  ++ V L +     T+   V    P+   I  V ++++ 
Sbjct: 302 DLPDSPEAYFQEAGRAGRDGEKAYAVILYSKSDKTTLHKRVVDTFPDKEYILNVYEHLQY 361

Query: 374 ETHNGRW-------ELQLHQLSNVSNIRQLPLKTLLVQLEMMGVIKPLYAYYADISYRFI 426
                         E  L +         +P+ + L  L   G ++  Y    D S R +
Sbjct: 362 YYQMAMGDGFQCIREFNLEEFCRKFKYFPVPVDSALKILTQAGYLE--YTDEQDNSSRIL 419

Query: 427 ----EPQAQILSQFSPERQAFLNDIF-THTQMKRVWGSLDFSALYQATGAERTRVLAALE 481
                 +   L +   E +A +  I  ++T +   +  +   +L   TG  R ++   L 
Sbjct: 420 FTIRRDELYKLREMGKEAEALIQSILRSYTGVFTDYAYISEESLAVRTGLTRQQIYNILV 479

Query: 482 YLASQQLIELEAKRVTDVYQVNAEVLAQGHLADELHQYFTDKEAKEVARIAQLVRFFEL- 540
            L  +++++   ++ T       E L    L      Y  +++A+  ARI  +  +    
Sbjct: 480 TLTKRRIVDYIPRKKTPYIIYTRERLELRFLHIPASVY-EERKARYEARIKAMEEYVTTE 538

Query: 541 TTCLNYNLARYFDDNAAPQSCGHCSVCRGQ-----LAKLAYSEVPK 581
             C +  L RYF +     +CG C VC  +     L++ +Y EV +
Sbjct: 539 NICRSRMLLRYFGEK-NEHNCGQCDVCLSKRATDNLSEESYEEVKR 583