Pairwise Alignments

Query, 658 a.a., ATP-dependent DNA helicase RecQ (RefSeq) from Shewanella sp. ANA-3

Subject, 726 a.a., ATP-dependent DNA helicase recQ (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  248 bits (633), Expect = 7e-70
 Identities = 136/343 (39%), Positives = 197/343 (57%), Gaps = 5/343 (1%)

Query: 18  LQQQFGFDGFRQGQHEVVSQLLSGHSSLAIFPTGSGKSLCYQFTALQLPHLTLVVSPLLA 77
           L++ FGF+ F+  Q  ++  LL G  +  + PTG GKSLCYQ  +L +    +V+SPL+A
Sbjct: 11  LKKYFGFNKFKGNQEAIIQNLLDGKDTFVLMPTGGGKSLCYQLPSLLMEGTAIVISPLIA 70

Query: 78  LIKDQL----SFLHEKGIKAASIDSTLTPELTQQVMRDARYGELKLLMVSVERFKNERFR 133
           L+K+Q+    +F  E GI A  I+S+L      QV  D   G+ KLL V+ E    E   
Sbjct: 71  LMKNQVDAMRNFSEEDGI-AHFINSSLNKGAIDQVRSDILAGKTKLLYVAPESLTKEENV 129

Query: 134 QFIQSIPISMLVVDEAHCISEWGHNFRPDYLKLPDYRRELAIPLVLLLTATATRKVKLDM 193
            F++S+ IS   VDEAHCISEWGH+FRP+Y ++     E+    ++ LTATAT KV+ D+
Sbjct: 130 DFLRSVKISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTATATPKVQHDI 189

Query: 194 AARFDIKPQHIVQTGFYRSNLDLTVLPVASQHKLTALQQQLNLFTGTGIVYVTLQHTAED 253
                +    + ++ F R NL   V    +      ++   N    +GI+Y   +   E+
Sbjct: 190 QKNLGMVDAQVFKSSFNRPNLYYEVRAKTNNIDKDIIKFIKNNSEKSGIIYCLSRKKVEE 249

Query: 254 VAAKLCQMGFDASAYHAGFEDEKRQQIQQDFMQGKIRIVVATIAFGMGIDKSNIRFVVHY 313
           +A  L   G +A  YHAG +   R + Q DF+  K+ ++VATIAFGMGIDK ++RFV+HY
Sbjct: 250 LAEILQANGINARPYHAGMDSMTRTKNQDDFLMEKVEVIVATIAFGMGIDKPDVRFVIHY 309

Query: 314 DLPKSIENYCQEIGRAGRDGLLSHCVTLANLDGINTVENFVYG 356
           D+PKS+E Y QE GRAGRDG    C+T      +  +E F+ G
Sbjct: 310 DIPKSLEGYYQETGRAGRDGGEGQCLTFYTNKDLQKLEKFMQG 352



 Score = 27.3 bits (59), Expect = 0.003
 Identities = 9/37 (24%), Positives = 17/37 (45%)

Query: 531 IAQLVRFFELTTCLNYNLARYFDDNAAPQSCGHCSVC 567
           + +   + E + C    L  YF +    ++CG+C  C
Sbjct: 365 LLETAAYAESSVCRRKTLLHYFGEEYTEENCGNCDNC 401