Pairwise Alignments
Query, 878 a.a., hypothetical protein (RefSeq) from Shewanella sp. ANA-3
Subject, 547 a.a., intermembrane transport protein PqiB from Ralstonia sp. UNC404CL21Col
Score = 187 bits (476), Expect = 1e-51
Identities = 106/315 (33%), Positives = 173/315 (54%), Gaps = 14/315 (4%)
Query: 4 IESPKVVKKKLFSP--IWLLPIVALALGAWLGIKSIKESGIEIQIHFPSATGIDVGKTLV 61
I +P+ K+K + P IWL+PIVAL +GA L + I G ++ + F SA GI+ GKT V
Sbjct: 10 IPAPRRTKRKRWLPSLIWLVPIVALVVGATLMARVILARGAQVTVTFSSAEGIEAGKTRV 69
Query: 62 KYQGLTVGKVKDIGIDEDLKGVNVKVMMDYRAKPFLNKETLFWLVTPKASITGVEGLDAL 121
KY+ + +G VK +G+ +D G V + + + K F +T FW+V P+ + + GL L
Sbjct: 70 KYKSVDIGVVKAVGLTDDRSGAVVLIELTHDGKAFAASDTRFWVVRPRVAAGSISGLGTL 129
Query: 122 FSGNYIAIQPGKG-NAATFFEAERQPPPMQIGTEGVMIELTADKLGSLDVGSPVFFRQIP 180
SG YI + G+ + F PP + G L A LGSLD+G+PV+FR++
Sbjct: 130 LSGAYIGVDGGRSQEKKSVFRGLDTPPAISADAPGKQFTLHAPDLGSLDIGAPVYFRRVR 189
Query: 181 VGSVVSYRLDGNAR-VIISAFIQEQYARLVKKNSHFWNVSGVKVDASLAGIKVNTESLAS 239
VG V +Y +D + + V + F+ + + V + + FWN SG+ + G+KV+T+SL +
Sbjct: 190 VGQVTAYDIDADGKGVTLHIFVNAPFDKFVARGTRFWNASGIDLKLDANGLKVDTQSLLT 249
Query: 240 ILAGGVSFSSDDKA---PAAQNGDSFALYDSETSALGGIE------VSLTMNDGNAIDKG 290
+ GG++F + ++A PAA + F L +ET+AL E V ++ G
Sbjct: 250 VALGGIAFQTPEEADHEPAASDA-QFQLVRNETAALKDPEHLSQTVVMYFHRSLRGLNVG 308
Query: 291 TRIVYRGITIGTLQS 305
+ ++GI +G ++S
Sbjct: 309 APVEFKGINVGEIKS 323
Score = 103 bits (258), Expect = 2e-26
Identities = 63/222 (28%), Positives = 115/222 (51%), Gaps = 4/222 (1%)
Query: 627 QLALAQAQAIKLTLPASAKL-AAKAAIRYQGHQVGEVTQVKLNTDLTTLTATAYLYGDYA 685
++ LA+ + +T ++ + A K ++Y+ +G V V L D + L D
Sbjct: 43 RVILARGAQVTVTFSSAEGIEAGKTRVKYKSVDIGVVKAVGLTDDRSGAVVLIELTHD-G 101
Query: 686 EHFSRSDTEYHMVDAQISLAGIKAPETLITGPYIGVLPGKSNQKATHFQAKLVESSYANV 745
+ F+ SDT + +V +++ I TL++G YIGV G+S +K + F+ L +
Sbjct: 102 KAFAASDTRFWVVRPRVAAGSISGLGTLLSGAYIGVDGGRSQEKKSVFRG-LDTPPAISA 160
Query: 746 AEDALKFTLEDSNLGSMKVGTPIFFRGIKVGQIDGYSLSSQGNSVLMQAHIEPQYSHLVN 805
+FTL +LGS+ +G P++FR ++VGQ+ Y + + G V + + + V
Sbjct: 161 DAPGKQFTLHAPDLGSLDIGAPVYFRRVRVGQVTAYDIDADGKGVTLHIFVNAPFDKFVA 220
Query: 806 QSSQFWDASGIKVDVGIFSGAQIEAGSLETLLAGGINVATKE 847
+ ++FW+ASGI + + +G +++ SL T+ GGI T E
Sbjct: 221 RGTRFWNASGIDLKLDA-NGLKVDTQSLLTVALGGIAFQTPE 261
Score = 84.7 bits (208), Expect = 1e-20
Identities = 77/331 (23%), Positives = 137/331 (41%), Gaps = 25/331 (7%)
Query: 382 LLKAKKRQLTITSTENMGLTAG-AEVRYKQLSIGEVLAVRLTKDLSAVEYQLELQPEFAS 440
++ A+ Q+T+T + G+ AG V+YK + IG V AV LT D S +EL + +
Sbjct: 44 VILARGAQVTVTFSSAEGIEAGKTRVKYKSVDIGVVKAVGLTDDRSGAVVLIELTHDGKA 103
Query: 441 LVRSDSYFIPESALSIDASLDGVSVKTRDMATLTKGAVSLIPGSSDTPLAANTRLSLFSS 500
SD+ F S+ G + TL GA + G + + S+F
Sbjct: 104 FAASDTRFWVVRPRVAAGSISG-------LGTLLSGAYIGVDGGR-----SQEKKSVFRG 151
Query: 501 IDEAKQFFARQQRLYFTLSSVDGADVSQGSPIYYKKMQIGSVESVNWQSKTEDFAIKIAI 560
+D A FTL + D + G+P+Y++++++G V + + + + + I +
Sbjct: 152 LDTPPAISADAPGKQFTLHAPDLGSLDIGAPVYFRRVRVGQVTAYDIDADGKGVTLHIFV 211
Query: 561 DKQFQPLVQKPKVFWRNSAVDVSASLAGIDVAVAPLQGALKGSISLGLLDSSTAEP---N 617
+ F V + FW S +D+ G+ V L G I+ + + EP +
Sbjct: 212 NAPFDKFVARGTRFWNASGIDLKLDANGLKVDTQSLLTVALGGIAFQTPEEADHEPAASD 271
Query: 618 AALKLYESKQLALAQAQAIKLTL-----PASAKLAAKAAIRYQGHQVGEVTQVKLNTDLT 672
A +L ++ AL + + T+ + L A + ++G VGE+ + ++
Sbjct: 272 AQFQLVRNETAALKDPEHLSQTVVMYFHRSLRGLNVGAPVEFKGINVGEIKSIGIHYSKK 331
Query: 673 ----TLTATAYLYGDYAEHFSRSDTEYHMVD 699
L TA LY R D H +
Sbjct: 332 RHEFVLPVTATLYPTRFGMDIRDDNPQHAAE 362
Score = 51.6 bits (122), Expect = 1e-10
Identities = 58/289 (20%), Positives = 121/289 (41%), Gaps = 23/289 (7%)
Query: 504 AKQFFARQQRLYFTLSSVDGADVSQGSPIYYKKMQIGSVESVNWQSKTEDFAIKIAIDKQ 563
A+ AR ++ T SS +G + + + + YK + IG V++V + I +
Sbjct: 42 ARVILARGAQVTVTFSSAEGIEAGK-TRVKYKSVDIGVVKAVGLTDDRSGAVVLIELTHD 100
Query: 564 FQPLVQKPKVFWRNSAVDVSASLAGIDVAVAPLQGALKGSISLGLLDSSTAEPNAALKLY 623
+ FW + S++G+ G L +G+ + E + +
Sbjct: 101 GKAFAASDTRFWVVRPRVAAGSISGL--------GTLLSGAYIGVDGGRSQEKKSVFRGL 152
Query: 624 ESKQLALAQAQAIKLTL--PASAKLAAKAAIRYQGHQVGEVTQVKLNTDLTTLTATAYLY 681
++ A A + TL P L A + ++ +VG+VT ++ D +T ++
Sbjct: 153 DTPPAISADAPGKQFTLHAPDLGSLDIGAPVYFRRVRVGQVTAYDIDADGKGVTLHIFVN 212
Query: 682 GDYAEHFSRSDTEYHM--VDAQISLAGIKAPETLITGPYIGVLPGKSNQKATH------F 733
+ + +R ++ +D ++ G+K + +G + ++ ++A H
Sbjct: 213 APFDKFVARGTRFWNASGIDLKLDANGLKVDTQSLLTVALGGIAFQTPEEADHEPAASDA 272
Query: 734 QAKLVESSYANVAE-DALKFTLE---DSNLGSMKVGTPIFFRGIKVGQI 778
Q +LV + A + + + L T+ +L + VG P+ F+GI VG+I
Sbjct: 273 QFQLVRNETAALKDPEHLSQTVVMYFHRSLRGLNVGAPVEFKGINVGEI 321
Score = 26.6 bits (57), Expect = 0.004
Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 50 SATGIDVGKTLVKYQGLTVGKVKDIGI 76
S G++VG V+++G+ VG++K IGI
Sbjct: 301 SLRGLNVGAP-VEFKGINVGEIKSIGI 326