Pairwise Alignments

Query, 715 a.a., peptidyl-dipeptidase Dcp (RefSeq) from Shewanella sp. ANA-3

Subject, 679 a.a., oligopeptidase A (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  372 bits (954), Expect = e-107
 Identities = 230/687 (33%), Positives = 365/687 (53%), Gaps = 30/687 (4%)

Query: 46  TNVLLSKSPLQDQAPQFNLIKSSDYAPAFAQGIKEHEAEIAAIIANKQAPTFDNTILAME 105
           +N LL+ + L    P F+ IK      A    I +  A+I  ++ N    T++N I  +E
Sbjct: 2   SNPLLNGASL----PLFSQIKPEHIQVAVEHAIAQCRAKIDEVLQNPGPYTWENLIAPLE 57

Query: 106 TSGELLTRVSRTFFNLAGLISDDDFQKTEADLAPKLSAHRDNIYLDPSLFA-----RVET 160
              + L+++     ++  + S D+++       P LS +   +     L+      R   
Sbjct: 58  QVDDELSQIWSPVSHMNSVTSTDEWRAAHDACLPLLSEYGTYVGQHQGLYEAYKSLRASE 117

Query: 161 VYQQRAGLNAEDKRLVEFYYEQFVRAGAKLSDADKAKMRDFNAELATLATEFSQNSLKSF 220
           V++Q   L+   + ++E     F  +G  L DA K +  +    L+ L + FS   L + 
Sbjct: 118 VFEQ---LSQAQQMVIEHSLRDFELSGIGLDDAQKLRYGEIVKRLSELTSGFSNQLLDAT 174

Query: 221 KDDVIVVTDKAQLDGLSDSEIATLAAAAQAAGKTGYLITLVNTTRQPILASLNNRELRQK 280
           +    ++TD+A+L GL DS  A   A A+A    G+L TL   +  P++    NRELR++
Sbjct: 175 QAWTKLITDEAELAGLPDSAKAAAKAMAEARELEGWLFTLDFPSYLPVMTYSENRELREE 234

Query: 281 VWETSAHRAVAS--------NGPLIVKMAQLRAKKANLLGFDTWAAYAVADQMAKTPSAV 332
            +     RA           NGPL+ ++  LR + A LLGFD++A  ++A +MA+TP+ V
Sbjct: 235 CYRAFVTRASDQGPNAGEFDNGPLMDEILALRHELAQLLGFDSFAEKSLATKMAETPAQV 294

Query: 333 YEILDDLAPKALAHAKADAADIQAEIKKAGGNFELQPWDWAYYAEKVRQQKYALDESSIK 392
              L++LA ++   AKA+ A+++A  ++  G  E+  WD ++YAEK++Q KY + +  ++
Sbjct: 295 MAFLNELALRSKDQAKAELAELKAFAQEQYGVSEMASWDLSFYAEKLQQHKYEISQELLR 354

Query: 393 PYFEFNSVLKDGLFFAMHKLYGISVKPRTDLPVWNSDVLAFEVFDKDNSSIGLFYLDPYA 452
           PYF  + VL  GLF+ + +L+G+ +  +T+   W+ DV  F++FD+     G FYLD YA
Sbjct: 355 PYFPEDKVL-SGLFYTVSRLFGLKIIEQTEFDRWHKDVRFFDIFDETGEHRGSFYLDLYA 413

Query: 453 REGKGGGAWMDEF----VTQSGLLGTKPVVYNALNIPKPADG-PTLMTFDEVTTMFHEFG 507
           R GK GGAWMD+      T +GL   KPV Y   N   P DG P L T DEVTT+FHEFG
Sbjct: 414 RTGKRGGAWMDDCRVRRQTANGL--QKPVAYLTCNFNGPVDGKPALFTHDEVTTLFHEFG 471

Query: 508 HAVHGLFSKVKYPSVAG-TSTARDFVEFPSQVNEDWNIDPAVIANYAKHYQTGEPIPKAL 566
           H +H + +K+    V+G      D VE PSQ  E+W      +A  + HY+TGEP+PKA+
Sbjct: 472 HGIHHMLTKIDVAGVSGINGVPWDAVELPSQFMENWCWQEEALAEISGHYETGEPLPKAM 531

Query: 567 LDKILASNKFGQGFDTVEYLAAALLDMEWHSIGADTQNKDVEQFEHQVLAKHGLDFAPIP 626
           LDK+LA+  F  G   +  L  +L D   H      +   +++   +V  +  +   P  
Sbjct: 532 LDKMLAAKNFQSGMMMLRQLEFSLFDFRLHHEYDPAKGACIQETLDEVRRQVAVLIPPAF 591

Query: 627 PRYKSSYFSHAFSGGYSAGYYAYLWTEVFAADAFAYMGQHGGLKAENGDKFRDAVLSKGN 686
            R++   F+H F+GGY+AGYY+Y W EV +ADAF+   + G    E G +F   +L  G 
Sbjct: 592 NRFQHG-FAHIFAGGYAAGYYSYKWAEVLSADAFSRFEEEGIFNPETGRRFLHNILEMGG 650

Query: 687 SEDLMQDYIHFTGQKPTTDALLKRRGL 713
           S + M  +  F G++P+ DALL+  G+
Sbjct: 651 SAEPMDLFKQFMGREPSIDALLRHSGI 677