Pairwise Alignments

Query, 1433 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella sp. ANA-3

Subject, 639 a.a., GGDEF domain protein from Pseudomonas fluorescens FW300-N1B4

 Score =  391 bits (1005), Expect = e-112
 Identities = 224/558 (40%), Positives = 317/558 (56%), Gaps = 7/558 (1%)

Query: 860  RMTGTIKNISQFKQKEEQLKLFEKAIENISEGMFILDSEYRFVEVNEACCRISQRNRTDF 919
            R  G    + +     E+L+      +   EG+ + +S    V VN A   I+   R + 
Sbjct: 68   RCLGVGAKLRERNADRERLRQAAAVFDCTREGVLVTNSNGLIVHVNRAFMEITGYQREEV 127

Query: 920  IG---NLLTFDLYPESFSNQIRTMLKQQGRWASEVEASRGDNSHFHMELTIDAIYDELGE 976
            +G   N+     +P  F   +   L   G W+ E+   R +   +    TI  I D+ G 
Sbjct: 128  LGQRPNMFKSGHHPPVFYQVMFAALDSLGEWSGEIWNRRKNGEIYPQWQTIRLIRDDQGR 187

Query: 977  LSHYVGVFSDISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLGNLVNKEITH----ALM 1032
            LS YV VFSDIS  K  E EL  L ++D LT LPNR  L    G  V     H    AL+
Sbjct: 188  LSQYVAVFSDISAIKNSEHELTHLAHHDPLTDLPNRLLLTDRAGQAVASAQVHKRGCALL 247

Query: 1033 VLDLDNFKRINDSLGHQIGDQLLKLVSIRIKSILPKNTSIYRLGGDEFAIVLDKTSDISA 1092
            ++DLD+FK INDSLGH +GDQLLK V+ R+ ++     ++ RL GDEFA++ +       
Sbjct: 248  MIDLDHFKLINDSLGHSVGDQLLKAVAERLNALFGPGNTLARLSGDEFAVLTENCPQPGH 307

Query: 1093 SAAIAGRVIEAFKTMFEIGNEQLVLGVSIGIVFYPEDEQSEQALLRKADIAMYHAKSAGG 1152
            +AA+A RVI+  K  F+I    L +  SIGI  +P D  S + LLR AD A++ AKSAG 
Sbjct: 308  AAALAQRVIDGLKEPFQIDGHPLFINASIGISLFPSDALSAEQLLRNADSALFKAKSAGR 367

Query: 1153 NCYQFYSESLNQHAIKQLEIENLIREGLKEDLFEVYYQPKVDLKSGHVAGMEALVRLNHP 1212
            + Y  Y+E L  HA +++EI   +R  L++    VYYQP  DLK+  + G+EALVR  HP
Sbjct: 368  DGYALYTEELTAHAQQRVEIAFQLRRALEQQQLRVYYQPVHDLKTSRLIGVEALVRWEHP 427

Query: 1213 TRGLIPPNDFIPLAEENGLIIEIGEIVLRKACFAAQKWREQGLFKGRVAVNLSSRQFALP 1272
             RGL+ P +FIP+AE  GLI EI   ++R+AC    +W+  G+    VAVN+SSR FA  
Sbjct: 428  QRGLVSPAEFIPIAERTGLIAEIDAWIMRQACQQMCQWQAAGVVLSFVAVNVSSRLFARR 487

Query: 1273 DLQQRIESILRLTQLPASHLELEITEGTVIKQPEMAITVMQQLAKMGVSLALDDFGTGYS 1332
            +L Q++  +L  T L  ++LELE+TE  V++ PEMA+  M +L ++GV LA+DDFGTGYS
Sbjct: 488  ELYQQVAQVLHDTGLDPAYLELEVTESAVMEDPEMALEQMHRLRELGVRLAIDDFGTGYS 547

Query: 1333 SLSYLKRFPIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQAAQLNI 1392
            SL  LKR P+  LKID+ FV  +   + D  +   II +A +MG+ V  EG+EQ  Q + 
Sbjct: 548  SLLRLKRLPVQKLKIDQGFVAGLPGDEDDAAIARVIIALAQSMGMQVHAEGIEQVEQASF 607

Query: 1393 LRALNCEEIQGYIFSKAI 1410
            L   +C+  QGY F + +
Sbjct: 608  LFEHDCDLGQGYWFGRPV 625