Pairwise Alignments

Query, 1433 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella sp. ANA-3

Subject, 642 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  393 bits (1010), Expect = e-113
 Identities = 223/544 (40%), Positives = 321/544 (59%), Gaps = 10/544 (1%)

Query: 874  KEEQLKLFEKAIENISEGMFILDSEYRFVEVNEACCRISQRNRTDFIGN---LLTFDLYP 930
            +E  LK      ++  EG+ + D   R V VN A  RI+  +  + +G    L     + 
Sbjct: 75   QETSLKQAAAVFDSTQEGVLVTDPRQRIVHVNPAFSRITGYSTEEVLGQTPKLFASGKHD 134

Query: 931  ESFSNQIRTMLKQQGRWASEVEASRGDNSHFHMELTIDAIYDELGELSHYVGVFSDISRR 990
              F  Q+   LK +G W+ E+   R +   +     +  I+D  G+LSHYV VFSD+S  
Sbjct: 135  AEFYQQMWLALKDKGEWSGEIWNRRKNGEVYPQWQNLRCIHDNQGQLSHYVAVFSDLSAL 194

Query: 991  KQQEEELRKLTNNDLLTGLPNRSNLQVTLGNLVNKEITH----ALMVLDLDNFKRINDSL 1046
            K+  EEL +L + D L  LPNR          + +   H    AL+++DLD+FK IN+SL
Sbjct: 195  KRSREELDQLAHYDPLVNLPNRLLFTERAKQDLERARAHKRSGALLLIDLDHFKDINESL 254

Query: 1047 GHQIGDQLLKLVSIRIKSILPKNTSIYRLGGDEFAIVLDKTSDISASAAIAGRVIEAFKT 1106
            GH +GD LL+ VS R+   L K  ++ RLGGDEFA++ +      A+A +A R+++    
Sbjct: 255  GHSLGDALLQAVSTRLSEHLEKGMTLGRLGGDEFALLCEGYGAEKATA-LALRILDRLNE 313

Query: 1107 MFEIGNEQLVLGVSIGIVFYP--EDEQSEQALLRKADIAMYHAKSAGGNCYQFYSESLNQ 1164
             F IG+++L    SIGIV YP   D Q+ + L+R AD A++ AKS+G + Y FYSE L  
Sbjct: 314  SFHIGDQELFSSASIGIVLYPYPTDVQNAEQLMRNADSALFKAKSSGRSTYAFYSEELTS 373

Query: 1165 HAIKQLEIENLIREGLKEDLFEVYYQPKVDLKSGHVAGMEALVRLNHPTRGLIPPNDFIP 1224
             A +++E+   +R+ L++    ++YQP  DL+ G ++G EALVR  HP +GLI P  FIP
Sbjct: 374  QARQRVELVTALRQALEQGQLRLHYQPIYDLRQGTISGFEALVRWQHPEKGLIAPGVFIP 433

Query: 1225 LAEENGLIIEIGEIVLRKACFAAQKWREQGLFKGRVAVNLSSRQFALPDLQQRIESILRL 1284
            +AEE GLI  I   VL +AC  A++W  QG   G +AVN+SSR F   +L  ++ +IL  
Sbjct: 434  IAEETGLISAIDHWVLEQACNQAREWLGQGHPLGFIAVNISSRLFGNGELDLQVATILAR 493

Query: 1285 TQLPASHLELEITEGTVIKQPEMAITVMQQLAKMGVSLALDDFGTGYSSLSYLKRFPIHT 1344
            + L A HLELEITE  V++ P+ A+ ++Q+L  +GV LA+DDFGTGYSSL  LKR  +H 
Sbjct: 494  SGLEARHLELEITESAVMQDPDAALELLQRLRALGVQLAIDDFGTGYSSLQRLKRMNVHK 553

Query: 1345 LKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQAAQLNILRALNCEEIQGY 1404
            LKID+ FV  +     D  +  S+I +AHN+GL VV EG+E A Q   L A NC+  QGY
Sbjct: 554  LKIDQGFVRGLPDDRDDAAITRSVIGLAHNLGLKVVAEGIETAEQAAFLLAQNCDYGQGY 613

Query: 1405 IFSK 1408
             F++
Sbjct: 614  GFAR 617