Pairwise Alignments
Query, 1433 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella sp. ANA-3
Subject, 1494 a.a., sensory box protein (RefSeq) from Shewanella amazonensis SB2B
Score = 567 bits (1460), Expect = e-165
Identities = 458/1474 (31%), Positives = 693/1474 (47%), Gaps = 165/1474 (11%)
Query: 52 QSFGV-------AQGLSQGTVTSIVQDNDGYLWIGTLN-GLNRFDGRNFKHFYADGTDSG 103
Q FGV LS+G +T IVQD +G LW+ T GLNR D + K F G G
Sbjct: 75 QEFGVFLPDPSNTNSLSEGYITDIVQDPEGLLWVSTYTQGLNRLDLQTGK-FTRYGEADG 133
Query: 104 LPSSFIRSLQLDKNGD-LYVGTDNGLAIYDKSKDSF--IKYGHPLENKPIWSINISINSL 160
L S +R +L GD L++GT+ GL + I G+ L K NI L
Sbjct: 134 L--SELRVTRLAVIGDSLWIGTERGLFAMQRKSGQIRPIPLGNALTPKITSLGNIEDEYL 191
Query: 161 IIGTDNSIIEITGKNNFNTLAQEGIGEIKKSIKIG-YTYLFKDYSGKLYELKNGNLTLIK 219
++GT NN L + + IG YL YE+ + ++
Sbjct: 192 LVGTQAHGTYAISSNNIVKLKLPSTSPVNQIHSIGNVAYLAIGKELWQYEMDTHSAKILW 251
Query: 220 EN---------VIDIEQKDANTL-ILSSKNGLFEYDGN-----LVKKIDDRAFSQLAKNN 264
++ + D A + ++ GL E + + D R+F ++ NN
Sbjct: 252 QSEPQGFFHGDIRDFTLASAEEIWAIAPGAGLIELEKTDRWRARYHRNDSRSFRDISDNN 311
Query: 265 ELIYGISENSI------------INI-------LTRKIIGSLSEYAQDKATYFYVNKSYF 305
+ + N + INI L + + +A Y +
Sbjct: 312 LMSVLLDPNGVLWLGGSYSGLDKINIRRQYFDHLFDNSVALPKQINMVRAIY-QTREGVV 370
Query: 306 SVGSVDQGFSIIK-SQSNLVKHTTLAND----------------------STWHITKNKS 342
+G+ G +K ++ N HT L D S W +
Sbjct: 371 WIGTEGAGIKTLKPNEDNYQYHTHLFADALNLVPEAISLVVRDIIQDKEGSLWFASNYGL 430
Query: 343 GFLVSSDSEYISLFNNNFQKAVDFNTHTKGYKYAVMNEGKLFY----GTSSGLFVLENES 398
G L +S + + + + + +EG LFY GT F L+
Sbjct: 431 GHLATSGAFRLLHPPEHDGQGRTLALDKHDTLWVAFDEG-LFYMPISGTELKRFPLDETL 489
Query: 399 ATMLSQETISSLSSNDDGSILSAGTPDGKILIIKDSNVINTFDTQRGEPIFDIEIISENL 458
L+ I L DD L GT DG I + ++N I F +P + + +
Sbjct: 490 GDKLAVRQILGLEFIDDW--LWIGTLDGLIRLNPNTNDIQVFTH---DPANSSSLGNNRI 544
Query: 459 --FYVASQGGLRKYENGNETVVSEQLTYSIEKDNNNILFGTSSALMRYNTLTGTIEKVLS 516
Y A+ G + +G +++ + E+D I TS+ + +T
Sbjct: 545 RDIYSAANGDVWVGTHGGISILRQ------EQDGWQIRHLTSNEGVPSDT---------- 588
Query: 517 NNKEIYSIVSDIDF-ITVSSLGEVIVYNKKNHSSYTLNTSNGSQ-YEYNSP-SAIRVNEF 573
IY+I+ D SS + Y S T N G Q EYN + + +
Sbjct: 589 ----IYAILEDKQGQFWFSSNAGISRYTPGEDSIITFNKFEGLQEQEYNGGVKFVGQDGY 644
Query: 574 VLLAGINGISIVSPEEVNEYIKNQKVSKTEITNFSVFNISQEKNGKYLSQPIDVTN--EI 631
GINGI+ PE++ K+++ +T++S+ G ++ +D+T +
Sbjct: 645 FWFGGINGITRFLPEQIP---KSRQEPPLALTSYSL--------GGKRTRILDLTTPPSV 693
Query: 632 KLKYSEYPFSF-----DFISPMSDEFATSYYYRMQGLSDTWIYSNGTNSATYTNLSPGKY 686
++ + + SF DF P D FA Y +QG W + TYTNLSPG Y
Sbjct: 694 EMNFEDKVVSFEVTSLDFSYPGVDRFA----YYLQGFDSQWHSAQAQAQITYTNLSPGNY 749
Query: 687 VFQV---YAMNKLSGDKSPEKEVNIIITPPWWSSTQAKVIYFIILMLFTLFVFKAIL--- 740
+ +V A N L V + + PW+ + A V+Y + L+ + ++
Sbjct: 750 LLRVRHGLAANPLGYQILT---VPLTVVAPWYRTPPAYVLYTLTLVAILGWFWRERRVKR 806
Query: 741 -RKREIQRQIALSEERLKLSLWGSGDEMWDWDIETGNIFRSNIWGALEFPRDGHRSGNSD 799
++RE + I SEERLKL+LW SGD MWDWDI +G +FR+ + P +
Sbjct: 807 RQRREFETSIRTSEERLKLALWASGDGMWDWDIPSGQVFRTRM-----HPHTEQQLNGPV 861
Query: 800 EESNIHPMEQERVREALNKHFYGETDHFEAAYRVKGKDDSWIWILDRAKIVERDDKDNAL 859
IHP ++ RV A+ +H G +EA YR++ K WIWI DR K+VERD + +
Sbjct: 862 LLDRIHPEDKPRVLHAIEQHIDGSRAFYEAEYRIENKPGHWIWITDRGKVVERDKQGKPV 921
Query: 860 RMTGTIKNISQFKQKEEQLKLFEKAIENISEGMFILDSEYRFVEVNEACCRISQRNRTDF 919
RM GT K+I+ K E +L+L + + +++E + + +YR VN A I+ N
Sbjct: 922 RMVGTHKDITSRKNAENELRLSAQVLASMNEAVVVGGLDYRIASVNPAFSLITGFNPEQV 981
Query: 920 IGN---LLTFDLYPESFSNQIRTMLKQQGRWASEVEASRGDNSHFHMELTIDAIYDELGE 976
G LT D I L + WA E++ D + L I+ + D E
Sbjct: 982 QGKHFLFLTHDRKQRHIYEAIEQQLLRNKHWAGELKIRTRDQRAILIWLEINQVLDSKAE 1041
Query: 977 LSHYVGVFSDISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTL----------GNLVNKE 1026
SH+V VF+DI+ RK+ EE+LR L + D LT LPNR+ Q L GN+V
Sbjct: 1042 ASHFVAVFTDITDRKKAEEDLRLLASYDPLTNLPNRTLFQDRLDHALAQAHRTGNMV--- 1098
Query: 1027 ITHALMVLDLDNFKRINDSLGHQIGDQLLKLVSIRIKSILPKNTSIYRLGGDEFAIVLDK 1086
AL+ LDLD FK INDS+GH IGD LLK V+ R+++ + + ++ RLGGDEF I+L+
Sbjct: 1099 ---ALLFLDLDRFKHINDSMGHHIGDLLLKAVAHRLQNCVREGDTVARLGGDEFTIILEG 1155
Query: 1087 TSDISASAAIAGRVIEAFKTMFEIGNEQLVLGVSIGIVFYPEDEQSEQALLRKADIAMYH 1146
+ A+ IA ++I AF+T F + ++ L + SIGI YP D +L++ AD AMYH
Sbjct: 1156 VAKTKAATVIAEKLIRAFQTPFILEDQALNISPSIGISLYPMDASDSTSLVKYADTAMYH 1215
Query: 1147 AKSAGGNCYQFYSESLNQHAIKQLEIENLIREGLKEDLFEVYYQPKVDLKSGHVAGMEAL 1206
AKS G N +QFY+ LN++A++ +++E I++ + + +QPK + G + G EAL
Sbjct: 1216 AKSLGRNNFQFYTLRLNEYAMRHVQLEAGIKQAIVRQELSLVFQPKFRVSDGSITGFEAL 1275
Query: 1207 VRLNHPTRGLIPPNDFIPLAEENGLIIEIGEIVLRKACFAAQKWREQGLFKGRVAVNLSS 1266
+R N G I P +FIPLAEE G+I ++G V+ +AC ++ G VAVNLS+
Sbjct: 1276 LRWNSKELGPISPAEFIPLAEEIGIINQLGHWVVNEACRHMAQFAAAGFDDLHVAVNLSA 1335
Query: 1267 RQFALPDLQQRIESILRLTQLPASHLELEITEGTVIKQPEMAITVMQQLAKMGVSLALDD 1326
RQ D+ IE L + LPA LELE+TE ++K P+ ++ V+Q+L +GVSLA+DD
Sbjct: 1336 RQLK-ADILSTIEVALAVAGLPAKCLELELTESMIMKSPQESVAVLQRLKALGVSLAVDD 1394
Query: 1327 FGTGYSSLSYLKRFPIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQ 1386
FGTGYSSL+YLKRFP+ TLKID+ FV DI D + +II +AH++ L+VV EGVE
Sbjct: 1395 FGTGYSSLAYLKRFPLDTLKIDREFVRDISTDPDDAAITGAIIALAHSLELNVVAEGVEN 1454
Query: 1387 AAQLNILRALNCEEIQGYIFSKAINEIEFTQLLQ 1420
AQL LR C+++QG++ K + + LL+
Sbjct: 1455 EAQLEHLRKHGCDQVQGFLLGKPMAARDAMALLK 1488
Score = 62.4 bits (150), Expect = 3e-13
Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 4/164 (2%)
Query: 16 LLQIILLSCLFLSTLISSFSASAFSSETSPIVILQSQSFGVAQGLSQGTVTSIVQDNDGY 75
+ + + + L L L + ASA L+ Q F + GL+Q T+T + D G
Sbjct: 1 MFRALFCALLSLILLFGTVPASAEHGSYHYHNTLEFQHFSSSDGLNQNTITRLYTDKAGM 60
Query: 76 LWIGTLNGLNRFDGRNFKHFYADGTD-SGLPSSFIRSLQLDKNGDLYVGT-DNGLAIYDK 133
LW G+ +GL+ F+G+ F F D ++ + L +I + D G L+V T GL D
Sbjct: 61 LWAGSQDGLHYFNGQEFGVFLPDPSNTNSLSEGYITDIVQDPEGLLWVSTYTQGLNRLDL 120
Query: 134 SKDSFIKYGHP--LENKPIWSINISINSLIIGTDNSIIEITGKN 175
F +YG L + + + +SL IGT+ + + K+
Sbjct: 121 QTGKFTRYGEADGLSELRVTRLAVIGDSLWIGTERGLFAMQRKS 164
Score = 29.3 bits (64), Expect = 0.003
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 34 FSASAFSSETSP---IVILQSQSFGVAQGLSQGTVTSIVQDNDGYLWIGTLNGLNRF 87
FS++A S +P +I ++ G+ + G V + QD GY W G +NG+ RF
Sbjct: 602 FSSNAGISRYTPGEDSIITFNKFEGLQEQEYNGGVKFVGQD--GYFWFGGINGITRF 656