Pairwise Alignments

Query, 762 a.a., CheA signal transduction histidine kinases (RefSeq) from Shewanella sp. ANA-3

Subject, 942 a.a., CheA Signal Transduction Histidine Kinases (STHK) (NCBI) from Rhodospirillum rubrum S1H

 Score =  311 bits (796), Expect = 1e-88
 Identities = 187/517 (36%), Positives = 273/517 (52%), Gaps = 20/517 (3%)

Query: 257 AKPKAEAVAA-APKPAAPAVDSDEITEDEFERLLDELHGKGGAPAKVTAKAESAPAKTEP 315
           A+ K  +VAA AP PA  A     I+E  +    + L     A AK    A  A    E 
Sbjct: 123 AEGKQPSVAAMAPAPARAAGSGPAISEGGYPVAAELLAEVSEAVAKGKRAATEAELAAEL 182

Query: 316 A-------KAPPSAAAPSTPAAPKASVATPATPPAVKAKTDVAVAEKAPAKAAAAASANV 368
           A       KA  + AAP     P+   ATP   PA       A     P           
Sbjct: 183 AAELAAAEKAEQAVAAPVPEVIPEVKAATPVVQPAKPPAVTAAHDTNGPNGGGGGEQKEG 242

Query: 369 PQGETTVRVDTARLDQIMNMVGELVLVRNRLLSLGISRDDEEMSKALANLDLVTADLQGA 428
                ++RV+   L+ +M +V ELVL RN+LL +    DD E    L  L  +T DLQ  
Sbjct: 243 SVASQSIRVNVELLENLMTLVSELVLTRNQLLQMVRGSDDSEFVAPLQRLSHITTDLQEG 302

Query: 429 VMKTRMQPIKKVFGRFPRVVRDLARTLNKEIDLVLVGEETDLDKNLVEALADPLVHLVRN 488
           VMKTRMQPI   + + PR+VRDL+  ++K+IDL + G +T+LD+ ++E + DPL H+VRN
Sbjct: 303 VMKTRMQPIGNAWAKLPRIVRDLSIEMHKKIDLQMYGADTELDRQVLEMIKDPLTHMVRN 362

Query: 489 SVDHGIEMPNDREASGKPRTGTITLSASQEGDHILLKIEDDGAGMDPEKLKQIAIKRGVL 548
           S DHG+E P++R A+GKP TG I L+A  EG HI+++I DDG G++ E+++  A+  G+ 
Sbjct: 363 SGDHGLEFPDERAAAGKPETGVIKLNAYHEGGHIIIEISDDGRGLNLERIRAKALSNGLA 422

Query: 549 DEDTAARMTDSEAYNLIFAPGFSTKVEISDISGRGVGMDVVKTRITQLNGTVHIDSMKGK 608
            E     MTD +    IF  G ST  +++ +SGRGVGMDVVKT I ++ GTV + +  GK
Sbjct: 423 TEAELENMTDQQIAQYIFRAGLSTAEKVTAVSGRGVGMDVVKTNIEKIGGTVELKTWPGK 482

Query: 609 GTVLEIKVPLTLAIMPTLMVDVAKQVFALPLSSVNEIFHLDLTKTNIVDGQLTVIV---R 665
           G+   IK+PLTLAI+  L+V+ + + FA+P  SV E+  +       ++   T  V   R
Sbjct: 483 GSRFVIKIPLTLAIVSALIVEASGERFAIPQISVLELVRVTANSETTIEQINTAPVLRLR 542

Query: 666 NKAVPLFYLEQWLHRN---------RTNFKHGDKKHGHVVIVQLGMMQIGFVVDALIGQE 716
           ++ +PL  L   L  +           +   G +    +V+ Q+G    G +VD +   E
Sbjct: 543 DRLMPLVSLSALLRLDDGDDEELGKTADATAGRRDETFIVVSQVGTYTFGIIVDRVFDTE 602

Query: 717 EVVIKPLGALLHGTPGMAGATITSDGGIALILDVPGL 753
           E+V+KP+  +L      +G TI  DG + +ILD  G+
Sbjct: 603 EIVVKPVAPILRHVSMFSGNTILGDGSVIMILDPNGI 639



 Score = 84.3 bits (207), Expect = 3e-20
 Identities = 69/222 (31%), Positives = 100/222 (45%), Gaps = 14/222 (6%)

Query: 7   EEILQDFLIEAGEILELLQEQLVALENNPDDTNLLNAIFRGFHTVKGGAGFLSLTPMVDV 66
           +++L +FL E  E +  L  +LV LE NP+D  +L+ IFR  HT+KG  GFL L  +  +
Sbjct: 2   DDLLSEFLTETSESIATLDVELVNLERNPNDKGILSNIFRLVHTIKGTCGFLGLPRLESL 61

Query: 67  CHEAENTFDLLRTGKRSVSAELMDIILQAVDAINTMFAQTQQGE-QQDPADPALLAKLKM 125
            H  EN     R G   V+   + +IL  +D I  +    +  E + +  D  L A L  
Sbjct: 62  AHAGENVLGKFRDGDLEVTPAAVTVILHTIDRIKEILGHLEANEVEPEGDDKDLKAHLNA 121

Query: 126 LSSGEPLPSESGQSSAEVEPLPEPEPEPEPVI-ETVFEVAAVEDMPIEKSELSDSSIDEI 184
            + G+        S A + P P       P I E  + VAA  ++  E SE         
Sbjct: 122 FAEGKQ------PSVAAMAPAPARAAGSGPAISEGGYPVAA--ELLAEVSEAVAKGKRAA 173

Query: 185 DEAEFEALLDALHGAGKGPGVSAPQADAAPAVQNKPQATSAS 226
            EAE  A L A   A +     A QA AAP  +  P+  +A+
Sbjct: 174 TEAELAAELAAELAAAE----KAEQAVAAPVPEVIPEVKAAT 211