Pairwise Alignments

Query, 357 a.a., recombinase A (RefSeq) from Shewanella sp. ANA-3

Subject, 354 a.a., DNA recombination/repair protein RecA from Vibrio cholerae E7946 ATCC 55056

 Score =  563 bits (1450), Expect = e-165
 Identities = 285/345 (82%), Positives = 315/345 (91%), Gaps = 6/345 (1%)

Query: 3   VDPNKEKALAAVLSQIEKQFGKGSIMKLGEDRSMDVETISTGSLSLDVALGAGGLPMGRI 62
           +D NK+KALAA L QIEKQFGKGSIM+LG++R+MDVETISTGSLSLD+ALGAGGLPMGRI
Sbjct: 1   MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRI 60

Query: 63  VEIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDT 122
           VEI+GPESSGKTTLTLE+IAAAQREGKTCAFIDAEHALDP+YAKKLGV+ID LL SQPDT
Sbjct: 61  VEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDT 120

Query: 123 GEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182
           GEQALEICDAL RSGAVDVI+VDSVAALTPKAEIEGE+GDSHMGL ARM+SQAMRKL GN
Sbjct: 121 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGN 180

Query: 183 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE 242
           LKQSN + IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEG+EVVGNE
Sbjct: 181 LKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNE 240

Query: 243 TRVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQG 302
           TR+KVVKNK+AAPFK+A  QI+YGQG NR GEL+DLGV HK++EK+GAWYSY GDKIGQG
Sbjct: 241 TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQG 300

Query: 303 RANAGKYLTENPAIAAEIDKTLRELLLSNPSAM-----SSSSSDD 342
           +ANA KYL ENP IA  +DK LRE+LL NP  M     +SS++DD
Sbjct: 301 KANACKYLKENPEIAKTLDKKLREMLL-NPENMQLIAETSSAADD 344