Pairwise Alignments

Query, 357 a.a., recombinase A (RefSeq) from Shewanella sp. ANA-3

Subject, 216 a.a., DNA repair and recombination protein RadB from Methanococcus maripaludis S2

 Score = 58.2 bits (139), Expect = 2e-13
 Identities = 51/207 (24%), Positives = 95/207 (45%), Gaps = 19/207 (9%)

Query: 55  GGLPMGRIVEIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKL-GVDID 113
           G +    I +IYGP   GKT + +  +  A   GK   +ID E +L     K+L G D D
Sbjct: 8   GNIEKKTITQIYGPPGVGKTNICIISMLKAIENGKNVVYIDTEGSLSIERIKQLSGKDCD 67

Query: 114 ----NLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAA 169
               N++  +P + E+  E  + +     V +II+D + +L  + E+  +I ++      
Sbjct: 68  ELLKNIIIYEPSSFEEQSEALEKIFLLENVGLIIIDGIVSLY-RLELCDKINENTK--LN 124

Query: 170 RMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRT 229
           RM+ + +  L    +Q N+ ++  NQ++  I     N     GG  L++++   + I ++
Sbjct: 125 RMLGKQISNLLKVSRQKNSGILITNQVKDSI-----NGIEPAGGRLLEYWSKSIIKIEKS 179

Query: 230 GAI------KEGDEVVGNETRVKVVKN 250
            +I      K      G   R K+++N
Sbjct: 180 ESIRKLTLEKHRHAKEGENLRFKILQN 206