Pairwise Alignments

Query, 861 a.a., DNA mismatch repair protein MutS (RefSeq) from Shewanella sp. ANA-3

Subject, 862 a.a., DNA mismatch repair protein MutS from Vibrio cholerae E7946 ATCC 55056

 Score = 1111 bits (2874), Expect = 0.0
 Identities = 569/860 (66%), Positives = 681/860 (79%), Gaps = 4/860 (0%)

Query: 2   NPIDTDDLEKHTPMMRQYLTMKAEHHDMLLFYRMGDFYELFYDDAKRASELLGISLTARG 61
           N   ++ L  HTPMM+QYL +KAE+ D+LLFYRMGDFYELFYDDAKRASELL ISLT RG
Sbjct: 5   NASPSESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRG 64

Query: 62  KSGGDPIPMAGIPYHAVEGYLAKLVQIGQSVAICEQIGDPATSKGPVERKVVRIVTPGTL 121
            S G+PIPMAG+P+HAVEGYLAKLVQ+G+SVAICEQIGDPATSKGPVERKVVRIVTPGT+
Sbjct: 65  ASAGEPIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSKGPVERKVVRIVTPGTV 124

Query: 122 TDEALLQERQDNLLAAVYQGKVGFGYATLDVSSGRFVIAELETKESLEAELQRTNPVEIL 181
           TDEALL ER DNL+AA+Y     FGYAT+D++SGRF ++E +T+E + AELQRT+P E+L
Sbjct: 125 TDEALLSERVDNLIAAIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELL 184

Query: 182 YSEDFGAMELLHHFKGKRRRPEWEFDYDTSIKLLLAQFGTKDLHGFGITDARLSLQAAGC 241
           + EDF  + L+   +G RRRP WEF+ DT+ + L  QFGT+DL GFG+  A+L L AAGC
Sbjct: 185 FPEDFSPVHLMASRQGNRRRPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLGLCAAGC 244

Query: 242 LMQYVKDTQRTALPHINAITRFNQTDTIVLDAATRRNLELTQNLSGGRDNTLAAVLDNTA 301
           L+QYVKDTQRTALPHI ++T   Q  +++LDAATRRNLELT NL+GG DNTLA VLD+ A
Sbjct: 245 LIQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAEVLDHCA 304

Query: 302 TAMGSRMLQRWIHQPLRDHAQIFARQTAVNELLETTAHESLHDQLKALGDIERIMARLAL 361
           T MGSRML+RWIHQP+RD+A +  R  A+ EL ET  +  LH  LK +GDIERI+ARLAL
Sbjct: 305 TPMGSRMLKRWIHQPMRDNATLNQRLDAITELKETALYGELHPVLKQIGDIERILARLAL 364

Query: 362 RTARPRDFARLRQALNLLPQLQQSLAQLSAPHTVKLGQLLGEFPEEQQLLERAIVDNPPM 421
           R+ARPRD ARLR A+  LP+L   +++L  PH  +L        E   LLERAI +NPP+
Sbjct: 365 RSARPRDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDELCDLLERAIKENPPV 424

Query: 422 LIRDGGVIREGYNAELDEWRGLSEGATDYLVQLEAREKERTGIATLKVGYNRVHGYYIEV 481
           +IRDGGVI +GY+AELDEWR L+ GAT++L +LEA E++R GI TLKVGYN VHG+YI+V
Sbjct: 425 VIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNNVHGFYIQV 484

Query: 482 SRLQSQQVPLNYQRRQTLKNMERYITPELKEYEEKVLSSQGKALALEKQLWDELFDLILP 541
           SR QS  VP +Y RRQTLKN ERYI  ELK++E+KVL+S+ +ALALEKQLW+ELFDL++P
Sbjct: 485 SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQLWEELFDLLMP 544

Query: 542 KLHELQAFARAAAELDVLSNFAERAETLGYTCPELSSEIGVKIEAGRHPVVERVSQTPFI 601
            L +LQ  A + A+LDVL N AERAE L Y  P L  E G+ I+ GRHPVVERV   PFI
Sbjct: 545 HLEQLQQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHIQGGRHPVVERVMNEPFI 604

Query: 602 ANPVTLHNQRRMLIVTGPNMGGKSTYMRQVALITLMAHIGCFVPADRAIIGPIDRIFTRI 661
           ANP+ L+ QRRMLI+TGPNMGGKSTYMRQ ALI LMAHIG +VPA+ A IGP+DRIFTRI
Sbjct: 605 ANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSYVPAESASIGPLDRIFTRI 664

Query: 662 GASDDLASGRSTFMVEMTETANILHNATAQSLVLMDEIGRGTSTYDGLSLAWSAAEYLAQ 721
           GASDDLASGRSTFMVEMTETANILHNAT  SLVLMDEIGRGTSTYDGLSLAW++AE+LA+
Sbjct: 665 GASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGTSTYDGLSLAWASAEWLAK 724

Query: 722 QVGAMTLFATHYFELTQLPELMAGVYNVHLDAIEHEDTIAFMHAVQEGAASKSYGLQVAA 781
           ++GAMTLFATHYFELT+LP ++  + NVHLDA+EH D IAFMHAVQEGAASKSYGL VA 
Sbjct: 725 EIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFMHAVQEGAASKSYGLAVAG 784

Query: 782 LAGVPARVIKAAKHKLHQLESRDHQVEGANVNGTRAPIQTLLAL-PEPVENPAVSKLKDI 840
           LAGVP  VIK A+ KL QLE    Q        +R  I   L+L PEP  +     L  +
Sbjct: 785 LAGVPKPVIKNARAKLQQLELLSSQ-PAETRKPSRVDIANQLSLIPEP--SAVEQALAGV 841

Query: 841 NPDNLTPKQALDLLYELKRL 860
           +PD LTP+QALD+LY+LK+L
Sbjct: 842 DPDQLTPRQALDMLYQLKKL 861