Pairwise Alignments

Query, 861 a.a., DNA mismatch repair protein MutS (RefSeq) from Shewanella sp. ANA-3

Subject, 877 a.a., DNA mismatch repair protein MutS from Phaeobacter inhibens DSM 17395

 Score =  578 bits (1490), Expect = e-169
 Identities = 354/877 (40%), Positives = 520/877 (59%), Gaps = 39/877 (4%)

Query: 13  TPMMRQYLTMKAEHHDMLLFYRMGDFYELFYDDAKRASELLGISLTARGKSGGDPIPMAG 72
           TPMM QYL +KA++ D LLFYRMGDFYE+F+DDA  A+E L I+LT RGK  G+ IPM G
Sbjct: 5   TPMMAQYLDIKAQYPDALLFYRMGDFYEMFFDDAVNAAEALDIALTKRGKHDGNDIPMCG 64

Query: 73  IPYHAVEGYLAKLVQIGQSVAICEQIGDPAT-----SKGPVERKVVRIVTPGTLTDEALL 127
           +P HA EGYL  L++ G  VA+ EQ+  PA      SK  V+R VVR+VTPGT+T+++LL
Sbjct: 65  VPVHAAEGYLLTLIRKGFRVAVGEQLESPAEAKKRGSKSVVKRDVVRLVTPGTITEDSLL 124

Query: 128 QERQDNLLAAVYQGKVGFGYATLDVSSGRFVIAELETKESLEAELQRTNPVEILYSEDFG 187
           + R+ N L A  + +     A  D+S+G F +  + +   +  EL R  P E++   D  
Sbjct: 125 EARRHNFLTAYCELRDQAALAWADISTGAFHVMPVASVR-VSPELARLAPSELIVP-DGP 182

Query: 188 AMELLHHFKGKRRRP-----EWEFDYDTSIKLLLAQFGTKDLHGFGITDARLSLQAAGCL 242
           A++ L       + P     +  FD   + K +   F    L  +G + +R  + A G +
Sbjct: 183 ALDQLRTIAEDHQIPVTPLAKSSFDSTAAEKRICDLFKVSTLESYG-SFSRAEISAMGAV 241

Query: 243 MQYVKDTQRTALPHINAITRFNQTDTIVLDAATRRNLELTQNLSGGRDNTLAAVLDNTAT 302
           + Y+  TQ+  LP +    +  +   + +DAATRR+LELT+ L+GGR  +L AV+D T T
Sbjct: 242 IDYLDITQKGKLPLLQPPQQEAEDRVVQIDAATRRSLELTRALTGGRGGSLLAVVDRTVT 301

Query: 303 AMGSRMLQRWIHQPLRDHAQIFARQTAVNELL-ETTAHESLHDQLKALGDIERIMARLAL 361
             G R+L++ +  P R+   I AR TA++ ++ +    +SL   L+   D++R ++RLAL
Sbjct: 302 PAGGRLLEQRLSSPSRNLDVIRARLTALDFVVGQIQLAQSLRTALRKTPDLDRALSRLAL 361

Query: 362 RTARPRDFARLRQALNLLPQLQQSLAQLSAPHTVK--LGQLLGEFPEEQQLLERAIVDNP 419
               PRD A +R  L     +     +   P  ++  L  L G F +   LL+ A++  P
Sbjct: 362 DRGGPRDLAAVRNTLIQSEAISDLCDRADMPALLQQSLSGLTG-FDDLLPLLDAALIAEP 420

Query: 420 PMLIRDGGVIREGYNAELDEWRGLSEGATDYLVQLEAREKERTGIATLKVGYNRVHGYYI 479
           P+L RDGG I EGY++ELDE R L +     +  L+ +  + TGI +LK+ +N V GY+I
Sbjct: 421 PLLARDGGFIAEGYDSELDEARTLRDEGRSVIAALQKKYSDHTGINSLKIKHNNVLGYFI 480

Query: 480 EVSRLQSQQV---PLN--YQRRQTLKNMERYITPELKEYEEKVLSSQGKALALEKQLWDE 534
           E +   ++++   PL+  Y  RQT  N  R+ T EL E E ++L++   AL +EK+L+  
Sbjct: 481 ETTATHAEKMLSAPLSETYIHRQTTANQVRFTTVELSEIETRILNAGNLALEIEKRLYTR 540

Query: 535 LFDLILPKLHELQAFARAAAELDVLSNFAERAETLGYTCPELSSEIGVKIEAGRHPVVER 594
           L D IL     L A AR  AELD+++  A+ A    ++CP + +     I  GRHPVVE+
Sbjct: 541 LSDAILADAALLNAAARGLAELDLITALADLALGENWSCPTVDNSREFNISGGRHPVVEQ 600

Query: 595 VSQ----TPFIANP--VTLHNQRRMLIVTGPNMGGKSTYMRQVALITLMAHIGCFVPADR 648
             +    + F+AN   +T      + ++TGPNM GKST++RQ ALI ++A +G +VPAD 
Sbjct: 601 ALRQQGGSSFVANDCDLTADTGAAIWLLTGPNMAGKSTFLRQNALIAILAQMGSYVPADS 660

Query: 649 AIIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATAQSLVLMDEIGRGTSTYDG 708
           A IG I ++F+R+GASDDLA GRSTFMVEM ETA IL+ A  ++LV++DEIGRGT+TYDG
Sbjct: 661 AHIGLISQLFSRVGASDDLARGRSTFMVEMVETAAILNQADDRALVILDEIGRGTATYDG 720

Query: 709 LSLAWSAAEYLAQQVGAMTLFATHYFELTQLPELMAGVYNVHLDAIEHEDTIAFMHAVQE 768
           LS+AW+  E+L +   A  LFATHY ELTQL   + GV N  +   E +  + F+H V++
Sbjct: 721 LSIAWATLEHLHEVNRARALFATHYHELTQLAGKLPGVDNATVSVKEWKGEVIFLHEVKK 780

Query: 769 GAASKSYGLQVAALAGVPARVIKAAKHKLHQLESRDH------QVEGANVNGTRAPIQTL 822
           GAA +SYG+QVA LAG+P  V+  A+  L  LE          Q++   +     P Q  
Sbjct: 781 GAADRSYGVQVAQLAGLPGSVVARARDVLDMLEEGSRSGAGKIQIDDLPLFAAAPPPQAA 840

Query: 823 LAL-PEPVENPAVSKLKDINPDNLTPKQALDLLYELK 858
            A+ P P+E    + L DI+PD+L+P++AL+ LY LK
Sbjct: 841 AAVGPSPIE----TLLNDIHPDDLSPREALEALYRLK 873