Pairwise Alignments

Query, 861 a.a., DNA mismatch repair protein MutS (RefSeq) from Shewanella sp. ANA-3

Subject, 877 a.a., DNA mismatch repair protein MutS (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  603 bits (1556), Expect = e-176
 Identities = 366/873 (41%), Positives = 509/873 (58%), Gaps = 29/873 (3%)

Query: 13  TPMMRQYLTMKAEHHDMLLFYRMGDFYELFYDDAKRASELLGISLTARGKSGGDPIPMAG 72
           TPMM QYL +K +H D LLFYRMGDFYE+F+DDA  A+  L I+LT RGK     IPM G
Sbjct: 7   TPMMAQYLEIKQDHADALLFYRMGDFYEMFFDDAVEAAAALDIALTKRGKHDDADIPMCG 66

Query: 73  IPYHAVEGYLAKLVQIGQSVAICEQIGDPAT-----SKGPVERKVVRIVTPGTLTDEALL 127
           +P HA EGYL  L++ G  VA+CEQ+ DPA      SK  V R+VVR+VTPGTLT+ +LL
Sbjct: 67  VPVHAAEGYLLTLIRKGFRVAVCEQMEDPAEAKKRGSKSVVRREVVRLVTPGTLTEASLL 126

Query: 128 QERQDNLLAAVYQGKVGFGYATLDVSSGRFVIAELETKESLEAELQRTNPVEILYSEDFG 187
           + R+ N LAA  + +     A +D+S+G F +        L  +L R  P E+L +E   
Sbjct: 127 EARRHNYLAAFAKVRDDSALAWVDISTGEFRVMACPAAR-LSVDLARLAPREVLLAEGND 185

Query: 188 AMELLH-HFKGKRRRPEWEFDYDTSIKLLLAQFGTKDLHGFGITDARLSLQAAGCLMQYV 246
              L+  H           FD   ++  L   +G  DL  FG  + R  L A G ++ Y+
Sbjct: 186 LRSLVEEHEAAATELGRASFDSTAAVDRLCRLYGVADLEAFGSFE-RADLSAMGAIVGYL 244

Query: 247 KDTQRTALPHINAITRFNQTDTIVLDAATRRNLELTQNLSGGRDNTLAAVLDNTATAMGS 306
           + TQ+  LP +    +      + +DAATRRNLELTQ+LSGGR+  L  V+D T TA G+
Sbjct: 245 ELTQKGKLPLLRKPVKERAQHGLQIDAATRRNLELTQSLSGGREGALLTVIDRTVTAQGA 304

Query: 307 RMLQRWIHQPLRDHAQIFARQTAVNELLETTAH-ESLHDQLKALGDIERIMARLALRTAR 365
           R+L R +  P  D + I  R   V   LE     +++   L+ + D++R ++RLAL    
Sbjct: 305 RLLARRLASPSADLSIIRTRHEGVRYALEAPEILDTVRTALRQVPDMDRALSRLALDRGG 364

Query: 366 PRDFARLRQALNLLPQLQQSLAQLSAPH--TVKLGQLLGEFPEEQQLLERAIVDNPPMLI 423
           PRD A +R  L     L ++L   + P        +  G     + LLE+A++  PP+L 
Sbjct: 365 PRDLAAIRNGLAQAATLAEALPDDALPPLWAQSKSRFFGH-DALRDLLEKALIAEPPLLT 423

Query: 424 RDGGVIREGYNAELDEWRGLSEGATDYLVQLEAREKERTGIATLKVGYNRVHGYYIEVSR 483
           RDGG +  GYN +LDE R L +     +  ++A   E TGIA+LKV +N V GY+IE + 
Sbjct: 424 RDGGFVASGYNVDLDEARQLRDEGRGVIAGMQAEYAEATGIASLKVKHNNVLGYFIETTA 483

Query: 484 LQSQQV---PLN--YQRRQTLKNMERYITPELKEYEEKVLSSQGKALALEKQLWDELFDL 538
             + ++   PL+  +  RQT  N  R+ T EL E E ++L++ G+ALALEK +++EL   
Sbjct: 484 THADKMLSPPLSDRFIHRQTTANAVRFTTVELSEMETRILNAGGRALALEKSIFEELRQA 543

Query: 539 ILPKLHELQAFARAAAELDVLSNFAERAETLGYTCPELSSEIGVKIEAGRHPVVE---RV 595
           ++    EL   ARA AELDV++  A  A    +  P++      +I  GRHPVVE   R 
Sbjct: 544 VIVAAAELSDCARALAELDVVTALAVLARDEDWCAPKVDDSRAFEISGGRHPVVEAALRA 603

Query: 596 SQTPFIANPVTLHNQRRML-IVTGPNMGGKSTYMRQVALITLMAHIGCFVPADRAIIGPI 654
           S TPFI N   L      + ++TGPNM GKST++RQ ALI ++A +G +VPA  A IG +
Sbjct: 604 SGTPFIRNDCDLSEGAAPIWLLTGPNMAGKSTFLRQNALIAILAQMGSYVPATAARIGLV 663

Query: 655 DRIFTRIGASDDLASGRSTFMVEMTETANILHNATAQSLVLMDEIGRGTSTYDGLSLAWS 714
            ++F+R+GASDDLA GRSTFMVEM ETA IL+ A  ++LV++DEIGRGT+TYDGLS+AW+
Sbjct: 664 AQVFSRVGASDDLARGRSTFMVEMVETAAILNQAGDRALVILDEIGRGTATYDGLSIAWA 723

Query: 715 AAEYLAQQVGAMTLFATHYFELTQLPELMAGVYNVHLDAIEHEDTIAFMHAVQEGAASKS 774
             E+L        LFATHY E+T L   ++GV N  +   EH+  + F+H V+ GAA +S
Sbjct: 724 TLEHLHGVNRCRALFATHYHEMTGLAAQLSGVENATVAVKEHDGDVIFLHEVRRGAADRS 783

Query: 775 YGLQVAALAGVPARVIKAAKHKLHQLESRDHQVEGANVNGTRAPIQTLLALPEPVENPAV 834
           YG+QVA LAG+P  V+  A+  L  LES +    G N          L A   P   PA 
Sbjct: 784 YGVQVAKLAGLPPSVVARAREVLKTLESGER--SGGNPAKALLEDLPLFANAAPPPPPAA 841

Query: 835 ------SKLKDINPDNLTPKQALDLLYELKRLS 861
                 ++L DI+PD L+P++ALDL+YELK L+
Sbjct: 842 PTSALEARLADISPDALSPREALDLVYELKSLA 874