Pairwise Alignments

Query, 861 a.a., DNA mismatch repair protein MutS (RefSeq) from Shewanella sp. ANA-3

Subject, 862 a.a., DNA mismatch repair protein mutS (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  603 bits (1554), Expect = e-176
 Identities = 341/864 (39%), Positives = 528/864 (61%), Gaps = 24/864 (2%)

Query: 15  MMRQYLTMKAEHHDMLLFYRMGDFYELFYDDAKRASELLGISLTARGKSGGDPIPMAGIP 74
           MM+Q+L +KA+H D ++ +R GDFYE +  DA  ASE+LGI+LT R    G  I MAG P
Sbjct: 1   MMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAIVASEILGITLTKRANGKGKTIEMAGFP 60

Query: 75  YHAVEGYLAKLVQIGQSVAICEQIGDPATSKGPVERKVVRIVTPGTLTDEALLQERQDNL 134
           +HA++ YL KL++ G+ VAIC+Q+ DP  +K  V+R +  +VTPG   ++ +L  +++N 
Sbjct: 61  HHALDTYLPKLIRAGKRVAICDQLEDPKLTKKLVKRGITELVTPGVSINDNVLNYKENNF 120

Query: 135 LAAVYQGKVGFGYATLDVSSGRFVIAELETKESLEAELQRTNPVEILYSEDFGAMELLHH 194
           LAAV+ GK   G A LD+S+G F+ AE    + ++  L    P EIL+    G   +   
Sbjct: 121 LAAVHFGKASCGVAFLDISTGEFLTAE-GPFDYVDKLLNNFGPKEILFER--GKRLMFEG 177

Query: 195 FKGKR----RRPEWEFDYDTSIKLLLAQFGTKDLHGFGITDARLSLQAAGCLMQYVKDTQ 250
             G +       +W F   T+ + LL  F TK+L GFG+   +  + A+G ++QY+  TQ
Sbjct: 178 NFGSKFFTFELDDWVFTESTAREKLLKHFETKNLKGFGVEHLKNGIIASGAILQYLTMTQ 237

Query: 251 RTALPHINAITRFNQTDTIVLDAATRRNLELTQNLSGGRDNTLAAVLDNTATAMGSRMLQ 310
            T + HI ++ R  +   + LD  T R+LEL  +++ G  ++L  V+D T + MG+R+L+
Sbjct: 238 HTQIGHITSLARIEEDKYVRLDKFTVRSLELIGSMNDG-GSSLLNVIDRTISPMGARLLK 296

Query: 311 RWIHQPLRDHAQIFARQTAVNELL-ETTAHESLHDQLKALGDIERIMARLALRTARPRDF 369
           RW+  PL+D   I  R   V     +    E + +QL  +GD+ERI++++A+    PR+ 
Sbjct: 297 RWMVFPLKDEKPINDRLNVVEYFFRQPDFKELIEEQLHLIGDLERIISKVAVGRVSPREV 356

Query: 370 ARLRQALNLLPQLQQSLAQLSAPHTVKLGQLLGEFPEEQQLLERAIVDNPPMLIRDGGVI 429
            +L+ AL  +  ++Q+  +       ++G+ L      +  + + I ++PP+LI  GGVI
Sbjct: 357 VQLKVALQAIEPIKQACLEADNASLNRIGEQLNLCISIRDRIAKEINNDPPLLINKGGVI 416

Query: 430 REGYNAELDEWRGLSEGATDYLVQLEAREKERTGIATLKVGYNRVHGYYIEVSRLQSQQV 489
           ++G N ELDE R +S    DYL+Q++ RE E+TGI +LKV YN V GYYIEV  +   +V
Sbjct: 417 KDGVNEELDELRRISYSGKDYLLQIQQRESEQTGIPSLKVAYNNVFGYYIEVRNIHKDKV 476

Query: 490 PLNYQRRQTLKNMERYITPELKEYEEKVLSSQGKALALEKQLWDELFDLILPKLHELQAF 549
           P  + R+QTL N ERYIT ELK YEEK+L ++ K L LE QL+ +L   +   + ++Q  
Sbjct: 477 PQEWIRKQTLVNAERYITQELKVYEEKILGAEDKILVLETQLYTDLVQALTEFIPQIQIN 536

Query: 550 ARAAAELDVLSNFAERAETLGYTCPELSSEIGVKIEAGRHPVVERVSQTP----FIANPV 605
           A   A LD L +FA  A    Y  P +     + I  GRHPV+E+  Q P    +IAN V
Sbjct: 537 ANQIARLDCLLSFANVARENNYIRPVIEDNDVLDIRQGRHPVIEK--QLPIGEKYIANDV 594

Query: 606 TLHN-QRRMLIVTGPNMGGKSTYMRQVALITLMAHIGCFVPADRAIIGPIDRIFTRIGAS 664
            L +  ++++I+TGPNM GKS  +RQ ALITL+A IG FVPA+ A IG +D+IFTR+GAS
Sbjct: 595 MLDSASQQIIIITGPNMAGKSALLRQTALITLLAQIGSFVPAESAHIGLVDKIFTRVGAS 654

Query: 665 DDLASGRSTFMVEMTETANILHNATAQSLVLMDEIGRGTSTYDGLSLAWSAAEYLAQ--Q 722
           D+++ G STFMVEM E A+IL+N +++SLVL DE+GRGTSTYDG+S+AW+  EY+ +  +
Sbjct: 655 DNISVGESTFMVEMNEAADILNNVSSRSLVLFDELGRGTSTYDGISIAWAIVEYIHEHPK 714

Query: 723 VGAMTLFATHYFELTQLPELMAGVYNVHLDAIEHEDTIAFMHAVQEGAASKSYGLQVAAL 782
             A TLFATHY EL ++ +    + N ++   E ++ + F+  ++ G +  S+G+ VA +
Sbjct: 715 AKARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKVIFLRKLERGGSEHSFGIHVAKM 774

Query: 783 AGVPARVIKAAKHKLHQLESRDHQ--VEG---ANVNGTRAPIQ-TLLALPEPVENPAVSK 836
           AG+P  ++K A   L QLES + Q  + G     V+  R+ +Q +   L +P+      +
Sbjct: 775 AGMPKSIVKRANTILKQLESDNRQQGISGKPLTEVSENRSGMQLSFFQLDDPILCQIRDE 834

Query: 837 LKDINPDNLTPKQALDLLYELKRL 860
           + +++ +NLTP +AL+ L ++K++
Sbjct: 835 ILNLDVNNLTPIEALNKLNDIKKI 858