Pairwise Alignments

Query, 526 a.a., peptide chain release factor 3 (RefSeq) from Shewanella sp. ANA-3

Subject, 532 a.a., peptide chain release factor 3 (RF-3) (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  499 bits (1284), Expect = e-145
 Identities = 258/526 (49%), Positives = 351/526 (66%), Gaps = 4/526 (0%)

Query: 1   MSDNKVEVDKRRTFAIISHPDAGKTTITEKVLLFGNALQKAGTVKGKKSGQHAKSDWMEM 60
           M+DN  E+ +RRTFAII+HPDAGKT++TEK+LLFG  +Q AG VK  K  + A SDWME+
Sbjct: 9   MADN-TEIQRRRTFAIIAHPDAGKTSLTEKLLLFGGQIQVAGAVKSNKIKKTATSDWMEI 67

Query: 61  EKDRGISITTSVMQFPYGGALVNLLDTPGHEDFSEDTYRTLTAVDSCLMVIDSAKGVEDR 120
           EK RGIS+TTSVM+F Y    +N+LDTPGH+DF+EDTYRTLTAVDS ++V+D AKGVE +
Sbjct: 68  EKQRGISVTTSVMEFDYRDYKINILDTPGHQDFAEDTYRTLTAVDSVIIVVDGAKGVETQ 127

Query: 121 TIKLMEVTRLRDTPIVTFMNKLDRDIRDPIELMDEVEDVLNIACAPITWPIGSGKEFKGV 180
           T KLMEV R+R TP++ F+NK+DR+ +DP +L+DE+E+ L I   P++WPI  G  FKGV
Sbjct: 128 TRKLMEVCRMRKTPVIIFVNKMDREGKDPFDLLDELEEELMIQVRPLSWPIEQGARFKGV 187

Query: 181 YHILRDEVVLYQSGMGHTIQERRVIEGIDNPELDKAIGSYAAD-LRDEMELVRGASNEFD 239
           Y+I   ++ LYQ      +   +V   I   ELDK IG   AD LR ++EL+ G   E D
Sbjct: 188 YNIYEKKLDLYQPSK--QVVTEKVEVDIHTEELDKQIGKPLADKLRGDLELIEGVYPELD 245

Query: 240 HQAFLKGELTPVFFGTALGNFGVDHILDGIVEWAPKPLPRESDARMIMPDEEKFTGFVFK 299
            +++L G+  PVFFG+AL NFGV  +L+  VE AP P P +++ R + PDE KFTGF+FK
Sbjct: 246 VESYLAGDCAPVFFGSALNNFGVQELLNCFVEIAPSPRPVQAEEREVKPDEPKFTGFIFK 305

Query: 300 IQANMDPKHRDRVAFMRVCSGRYEQGMKMHHVRIGKDVNVSDALTFMAGDRERAEVAYPG 359
           I AN+DP HR  VAF ++CSG++ +     HVR GK +  S    FMA  +   + AY G
Sbjct: 306 ITANIDPNHRSCVAFCKICSGKFVRNAPYQHVRHGKTMRFSSPTQFMAQRKTTIDEAYAG 365

Query: 360 DIIGLHNHGTIRIGDTFTQGEKFRFTGVPNFAPEMFRRIRLRDPLKQKQLLKGLVQLSEE 419
           DIIGL ++GT +IGDT T+GE   F G+P+F+PEMF+ I   DP+KQKQL KG+ QL +E
Sbjct: 366 DIIGLPDNGTFKIGDTLTEGELLHFRGLPSFSPEMFKYIENADPMKQKQLAKGIDQLMDE 425

Query: 420 GAVQVFRPLDSNDLIVGAVGVLQFEVVVGRLKSEYNVEAIYEGISVSTARWVYCKDERKL 479
           G  Q+F    +   I+G VG LQFEV+  RL +EYN    +E +S+  A WV   D  +L
Sbjct: 426 GVAQLFVNQFNGRKIIGTVGQLQFEVIQYRLLNEYNASCRWEPVSLYKACWVESDDPAEL 485

Query: 480 EEFRRKCSQNLALDGGDNLTYIAPTMVNLNLSMERYPDIEFAKTRE 525
           E F+++  Q +A D      ++A +   L ++   +  I+F  T E
Sbjct: 486 EAFKKRKYQYMAKDREGRDVFLADSGYVLQMAQMDFKHIKFHFTSE 531