Pairwise Alignments

Query, 317 a.a., tRNA pseudouridine synthase B (RefSeq) from Shewanella sp. ANA-3

Subject, 334 a.a., tRNA pseudouridine synthase B from Herbaspirillum seropedicae SmR1

 Score =  246 bits (628), Expect = 5e-70
 Identities = 136/304 (44%), Positives = 188/304 (61%), Gaps = 14/304 (4%)

Query: 10  IDGIVLLDKATGMSSNFALQRVKRFFNANKAGHTGALDPLATGMLPVCLGEATKFSQHLL 69
           + G++LLDK  G+SSN AL R KR  NA KAGHTG LDP ATG+LP+C GEATKFSQ LL
Sbjct: 37  VHGVLLLDKPVGLSSNDALIRAKRMLNAPKAGHTGTLDPFATGLLPLCFGEATKFSQDLL 96

Query: 70  DSDKRYLVTAKLGQRTDTSDSDGEVVQTRPLEFTEAQLMSALEHFRGDTQQVPSMYSALK 129
           ++DK Y     LG RTDT D++G+V+  RP+E +  Q+ +A+  FRG   QVP M+SALK
Sbjct: 97  EADKTYEAVVHLGVRTDTGDTEGQVLSERPVEVSVEQIEAAMAQFRGPISQVPPMHSALK 156

Query: 130 YQGQPLYKYAREGIEVPREARPITVFELNFIGLEGDELTLDIHCSKGTYIRTIIDDLGEM 189
             G+PLY+YAR GI + REAR +T+  L  +  +   L + + CSKGTYIR + +D+GE+
Sbjct: 157 RDGKPLYEYARAGITLEREARNVTIHALELLNYQAPMLRIRVTCSKGTYIRVLGEDIGEV 216

Query: 190 LGCGAHVIMLRRTQVAHYPYDKMVTLEQLEALVAKAQEEQLDPSSLLDSLLLPMDTAVAD 249
           LGCGAH+  LRR  V     +  VTLE ++A  A   E +        +LLLP+D  +  
Sbjct: 217 LGCGAHLNALRRIGVGPLTLEGAVTLESVDA--AGELEAR-------KALLLPVDGLLRS 267

Query: 250 FPEVNVPDASAAYLMQGQAVRV--SGLVADT---LVRITLGTERRFVGIGEMNQDGLLAP 304
           FP V + D  A   + GQ + +   G+        VR+   ++   +G G + +  +LAP
Sbjct: 268 FPAVQLSDELARRFLHGQRLPLGKEGVAVPQQTGRVRVYRSSDAALLGTGLLQEYAILAP 327

Query: 305 KRLV 308
           +RLV
Sbjct: 328 ERLV 331