Pairwise Alignments

Query, 317 a.a., tRNA pseudouridine synthase B (RefSeq) from Shewanella sp. ANA-3

Subject, 311 a.a., tRNA pseudouridine synthase B from Burkholderia phytofirmans PsJN

 Score =  252 bits (643), Expect = 9e-72
 Identities = 139/307 (45%), Positives = 195/307 (63%), Gaps = 16/307 (5%)

Query: 8   RFIDGIVLLDKATGMSSNFALQRVKRFFNANKAGHTGALDPLATGMLPVCLGEATKFSQH 67
           R +DG++LLDK  G+SSN AL R KR + A KAGHTG LDPLATG+LP+C GEATKFSQ 
Sbjct: 12  RALDGVLLLDKPLGLSSNDALIRAKRLYLAKKAGHTGTLDPLATGLLPLCFGEATKFSQD 71

Query: 68  LLDSDKRYLVTAKLGQRTDTSDSDGEVVQTRPLEFTEAQLMSALEHFRGDTQQVPSMYSA 127
           LL+++K Y  T +LG RT T D++GE + TR +   EA +++ L  F G+  QVP MYSA
Sbjct: 72  LLEANKTYEATMRLGVRTTTGDAEGEAIDTREVTCDEAAILAVLPTFLGEITQVPPMYSA 131

Query: 128 LKYQGQPLYKYAREGIEVPREARPITVFELNFIGLEGDELTLDIHCSKGTYIRTIIDDLG 187
           LK  G+PLY+YAR G  V RE R +T+  L  +     ++T  + CSKGTY+RT+ +D+G
Sbjct: 132 LKRDGKPLYEYARAGQTVEREGRQVTILALEMLACALPDVTFRVTCSKGTYVRTLAEDIG 191

Query: 188 EMLGCGAHVIMLRRTQVAHYPYDKMVTLEQLEALVAKAQEEQLDPSSLLDSLLLPMDTAV 247
           E LGCGAH++ LRRT V     D  VT   L+AL   A+ E+       D+ L P+D  +
Sbjct: 192 EALGCGAHLVALRRTGVGALTLDNSVT---LDALSDAAESER-------DAWLQPVDALL 241

Query: 248 ADFPEVNVPDASAAYLMQGQAVRVSGLV----ADTLVRITLGTER-RFVGIGEMNQDGLL 302
           + FP V + + +    + GQ +++S L     A    R+ +  E+ R +G+ +   +G+L
Sbjct: 242 STFPLVRLNEDATRRFLHGQRLKLSELTITGDAVNAPRVRVYAEQGRLLGVAKQG-EGVL 300

Query: 303 APKRLVV 309
           AP+RLVV
Sbjct: 301 APERLVV 307