Pairwise Alignments

Query, 1074 a.a., carbamoyl phosphate synthase large subunit (RefSeq) from Shewanella sp. ANA-3

Subject, 1127 a.a., carbamoyl-phosphate synthase large subunit from Bifidobacterium breve UCC2003

 Score = 1088 bits (2813), Expect = 0.0
 Identities = 589/1118 (52%), Positives = 759/1118 (67%), Gaps = 56/1118 (5%)

Query: 1    MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60
            MPKRTDIKS++++G+GPIVIGQA EFDYSG QAC+ LREEG RVILVNSNPATIMTDPEM
Sbjct: 1    MPKRTDIKSVMVIGSGPIVIGQAAEFDYSGTQACRVLREEGIRVILVNSNPATIMTDPEM 60

Query: 61   ADATYIEPIQWEVVRNIIAKERPDAILPTMGGQTALNCALELEAKGVLAEFNVEMIGATA 120
            ADATYIEPI   ++  IIAKERPDA+LPT+GGQTALN A+ L   GVL ++NVE+IGA+ 
Sbjct: 61   ADATYIEPIATPILEQIIAKERPDALLPTLGGQTALNAAMALGEAGVLKKYNVELIGASL 120

Query: 121  DAIDKAEDRSRFDKAMKSIGLECPRAGIAHSMEEAYGVLDLVGFPCIIRPSFTMGGSGGG 180
            +AID+ EDR  F K +   G E  R+ IAHS+EE   + + +G+P ++RPSFTMGG G G
Sbjct: 121  EAIDRGEDRELFKKVVDEAGAESARSRIAHSLEECDKIAEELGYPLVVRPSFTMGGLGSG 180

Query: 181  IAYNKEEFEEICSQGLDLSPTKELLIDESLIGWKEYEMEVVRDRNDNCIIVCSIENFDPM 240
            IA+++EE   I   G+  SPT E+LI+E + GWKE+E+E++RDRNDN ++VC IEN DP+
Sbjct: 181  IAHDEEELHRIAGAGIHYSPTDEVLIEEGIEGWKEFELELMRDRNDNVVVVCPIENVDPV 240

Query: 241  GVHTGDSITVAPAQTLTDKEYQLMRNASMAVLREIGVETGGSNVQFGINPKDGRMVIIEM 300
            GVHTGDSITVAP  TLTD+EYQ +R+  +A++R +GV+TGG N+QF I+PK GR+++IEM
Sbjct: 241  GVHTGDSITVAPCFTLTDREYQKLRDIGIAIIRGVGVDTGGCNIQFAIHPKTGRIIVIEM 300

Query: 301  NPRVSRSSALASKATGFPIAKIAAKLAVGFTLDELMNDITGGRTPASFEPAIDYVVTKVP 360
            NPRVSRSSALASKATGFPIAKIA KLA+G+TLDE+ NDIT   TPASFEP IDYVVTKVP
Sbjct: 301  NPRVSRSSALASKATGFPIAKIATKLALGYTLDEIRNDITQS-TPASFEPTIDYVVTKVP 359

Query: 361  RFNFEKFAGSNDRLTTQMKSVGEVMAIGRTFQESLQKALRGLEVSRHGFDPITDLTKADA 420
            RF FEKF G++  LTT MKSVGE MA+   FQESL KA+R ++    GF+   D   AD 
Sbjct: 360  RFAFEKFPGADPTLTTSMKSVGEAMALAGNFQESLGKAMRSIDKRHMGFNWDGDKPSADE 419

Query: 421  LARIRLELKEPGCDRIWYIADAMRAGLTLDEIFRLTNIDPWFLVQIEELIKLEGQVAEGG 480
            +A +   +  P   R   +  A+  G TLD+++  T IDPWFL Q+  L+  E   A   
Sbjct: 420  VAELLKAIHTPTEHRYLQLMRAIWGGATLDQLYAATKIDPWFLKQL--LLINETAQAVRE 477

Query: 481  LAGLNEELLRKLKRKGFADARLAAVLGV---NETEVRKLRDRFDIHPVYKRVDTCAAEFA 537
               L  +LL+K K  G +D ++A +  +    E  +R+LR  + + PVYK VDTCAAEF 
Sbjct: 478  AETLTPKLLKKAKLAGLSDVQIAHLRSLGDEGENTIRELRWNYGLKPVYKTVDTCAAEFD 537

Query: 538  TDTAYMYSTYEEECEANPSDREKIMVLGGGPNRIGQGIEFDYCCVHAALALREDGYETIM 597
              T Y YS Y +E E  P +RE +++LG GPNRIGQGIEFDY CVHA   L +D Y+TIM
Sbjct: 538  AATPYYYSCYADETELRPREREAVIILGSGPNRIGQGIEFDYTCVHAVQELGKD-YDTIM 596

Query: 598  VNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKP----KGVIVQYGGQTPLKLARAL 653
            VNCNPETVSTDYD SDRLYFEP+T EDVLEI   EK     KGVIVQ GGQTPL LA  L
Sbjct: 597  VNCNPETVSTDYDMSDRLYFEPLTFEDVLEIYEAEKKMGPVKGVIVQLGGQTPLSLAARL 656

Query: 654  EAAGVPIIGTSPDAIDRAEDRERFQQAIQRLEMKQPENDTVTTVEGAVIAAERIGYPLVV 713
            +AAGVPI+GT+P++ID AE+RE F + +++ EM  P   T  ++E A  AA RIGYP++V
Sbjct: 657  KAAGVPILGTTPESIDLAENRELFGEVLKKAEMNAPRYGTALSLEEAKEAAHRIGYPVLV 716

Query: 714  RPSYVLGGRAMEIVYDQQDLLRYFNEAVSVSNA---------SPVLLDHFLDDAIEVDID 764
            RPSYVLGGR MEIVYD + L +Y + A++ + A         SP+L+D FL DAIE+D+D
Sbjct: 717  RPSYVLGGRGMEIVYDDKQLNKYVDRALAEAQADTVVSGRLPSPLLIDKFLQDAIEIDVD 776

Query: 765  AVCDGETVVIGAIMEHIEQAGVHSGDSGCSLPPYTLSQAIQDEMRVQVRKLAMELGVVGL 824
            A+ DG+ + IG IMEH+E+AGVHSGD+ C+LPP TLS      +R     +A    V GL
Sbjct: 777  ALFDGKELYIGGIMEHVEEAGVHSGDAACTLPPSTLSDDQIRRLREGTYAIAAGCHVQGL 836

Query: 825  MNVQFAVKNNEIYMIEVNPRAARTVPFVSKATGVPLAKIAARVMAGQSLKAQNFTQEVIP 884
            +NVQ+A   N +Y+IE NPRA+RTVPF SKATGV LAK AAR+MAG+++  Q     ++P
Sbjct: 837  INVQYAFMANTLYVIEANPRASRTVPFASKATGVALAKAAARIMAGETIADQRANGLLLP 896

Query: 885  ----------PFYSVKEVVLPFNKF-----PGVDPLLGPEMRSTGEVMGVGDTFAEAYAK 929
                         +VKE VLPF +F       VD LLGPEMRSTGEVMG    F  A+AK
Sbjct: 897  KGDGGDIHPGQQVAVKESVLPFKRFRTPVGKTVDILLGPEMRSTGEVMGFDRDFPHAFAK 956

Query: 930  AQLGA-TSEVPKSGRALLSVRNSDKKRVADLAAKLIELGYQIDATHGTAVILGEAGINPR 988
            +QL A    +P  G   +SV ++DK+++  LA +L ELG+++ AT GTA +L   GI+  
Sbjct: 957  SQLAAYDGGLPTHGNVFISVNDTDKRQLPLLAVRLEELGFKLWATEGTASVLRRYGIDSN 1016

Query: 989  LVNK--------------VHEGR----PHILDRIKNGEYTYIVNTTEGRQAIEDSRQLRR 1030
            +V+K              VH        +++  I+ G+   I+NT   R +  D   +R 
Sbjct: 1017 IVDKISTRVDTDPEAPVEVHHAAGSVGKNVVQLIEEGKIDMILNTPNSRGSRSDGYSIRA 1076

Query: 1031 GALRYKVNYTTTMNAAFATCMAHAADDRTN--VTSVQE 1066
             A+   +   TT+    A  +A  A    +  + S+QE
Sbjct: 1077 AAIAADLPQFTTITEFQAALLAIEAVKHNDYQIMSIQE 1114