Pairwise Alignments

Query, 386 a.a., carbamoyl phosphate synthase small subunit (RefSeq) from Shewanella sp. ANA-3

Subject, 407 a.a., carbamoyl-phosphate synthase small subunit from Bifidobacterium breve UCC2003

 Score =  300 bits (767), Expect = 6e-86
 Identities = 174/398 (43%), Positives = 227/398 (57%), Gaps = 29/398 (7%)

Query: 9   ALLVLEDGTVFTGTAIGADGLSVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNTG 68
           A+LVLEDG V+ G   GA G + GE+VF T MTGYQE LTDPSY RQIV  T+PHIG+TG
Sbjct: 19  AVLVLEDGQVYVGEPYGALGETTGEIVFATGMTGYQETLTDPSYDRQIVVQTFPHIGDTG 78

Query: 69  TNNEDVESNGVHACGLIIRDLPLVASSFRNQQTLSDYLKANNVVGIADIDTRKLTRILRE 128
            N+ED ES+ +   G I+RD     S++R + +L D L  N +VG++ IDTRKL R LR 
Sbjct: 79  VNSEDPESSRIWVAGYIVRDPSPNVSNWRAEGSLDDDLVKNGIVGLSHIDTRKLVRHLRS 138

Query: 129 KGAQAGCIMAGADLDEA---------KALAAAKAFPGLKGMDLAKEVTTDKAYPWRKGSW 179
            G     I +G  L +A         + L   K  P ++G+ L  EV+T + Y       
Sbjct: 139 AGVMRAGIFSGEALVDAATGKLKTIEQLLEDVKNTPPMQGLSLYDEVSTKETY------- 191

Query: 180 RLVGGLPEDTPAEALKYKVVAYDYGVKQNILRMLVDRGCDVTVVPAKTSAADVLAMNPDG 239
             +    E    E L Y V A D G+K      + +RGC V VVP+  + A++ A+NPDG
Sbjct: 192 -TIEPCGEYEGKEPL-YTVAAVDLGIKGMTPHRMAERGCRVHVVPSTITFAELEALNPDG 249

Query: 240 VFLSNGPGDPEPCDYAIEAIQQILKTDTPIFGICLGHQLLALASGAKTLKMKFGHHGANH 299
           VF SNGPGDPE     IE ++Q+L    P FGIC G+QLL  A G  T K+KFGH G N 
Sbjct: 250 VFFSNGPGDPEQAGPEIELLRQVLDAGYPFFGICFGNQLLGRALGFGTYKLKFGHRGINQ 309

Query: 300 PVSNIEKGNVMITSQNHGFAAD-----------EATLPANIKVTHKSLFDGSLQGIHLTD 348
           PV ++  G V +T+ NHGFA D           E      + V+H  L D  ++G+   D
Sbjct: 310 PVKDLTTGKVEVTAHNHGFAVDAPIGKQVDAPFENGKYGKVFVSHIDLNDDVVEGLQCVD 369

Query: 349 KPAFSFQGHPEASPGPNDAAPLFDHFIELIEQYRQNAK 386
            PAFS Q HPEA+ GP+DAA LFD F EL++   +  K
Sbjct: 370 IPAFSVQYHPEAAAGPHDAAYLFDRFCELMKNNPKEGK 407