Pairwise Alignments

Query, 359 a.a., DNA polymerase IV (RefSeq) from Shewanella sp. ANA-3

Subject, 354 a.a., DNA polymerase IV from Marinobacter adhaerens HP15

 Score =  320 bits (819), Expect = 5e-92
 Identities = 174/337 (51%), Positives = 231/337 (68%), Gaps = 5/337 (1%)

Query: 2   RKIIHIDMDCYFAAVEMRDFPEYRGKPLAVGGSRVQRGVISTCNYEARKFGVRSAMATGY 61
           RKIIH+D DC++AAVEMRD P  R  PLAVGG    RGV++TCNY+AR +GVRSAM    
Sbjct: 4   RKIIHVDCDCFYAAVEMRDDPSLRDVPLAVGGDG-GRGVVTTCNYKARAYGVRSAMPGSE 62

Query: 62  ALKLCPDLILVPGRMQVYKEVSQQIRAIFCRYTELIEPLSLDEAYLDVSDCKLFKGSATL 121
           A +LCP L++VP  M  Y+ VSQQ+ AI    T+L+EPLSLDEA+LDVSD    KGSATL
Sbjct: 63  ARRLCPGLVMVPTDMGRYRAVSQQVMAILRELTDLVEPLSLDEAFLDVSDVTDHKGSATL 122

Query: 122 IAEAIRRDILAETGLTASAGVAPIKFLAKVASDLNKPNGQCVIPPDEVAEFVKSLSLRKI 181
           +A  +R  +  E G+T SAGVAP KFLAK+ASD  KP+G  VI P++VA+FV+ L + K+
Sbjct: 123 MARHLRERVRQEVGITISAGVAPNKFLAKIASDWEKPDGLFVIRPEDVADFVRGLPVEKL 182

Query: 182 PGVGKVTAEKLSSLGLNTCADVQAYPKQELIARFGKFGTVLVERAHGIDERGISVSRERK 241
            GVG+VTA KL +LG+ TC D+QA     LI RFGK G  L E AHG DER + VSR  K
Sbjct: 183 FGVGQVTASKLHALGVKTCGDMQALGPDVLIERFGKQGYRLHEMAHGRDERAVVVSRIAK 242

Query: 242 SVGVETTLAQDIYTLEQCQQVMPGLIQELSSRLGRSAKGRQIHKQVVKLKFNDFKQTTIE 301
           SV VE T +QD+  +  CQ VM  L+ +L+ RL R A+ + IHK  +K++++DF   T+E
Sbjct: 243 SVSVERTFSQDLPDMTACQTVMASLVADLNLRLSRKARRKPIHKLFIKIRYSDFSTHTLE 302

Query: 302 HRSDEV---SVVMFYELLSQAMARQEGRGIRLLGVSV 335
              ++V   ++  +  LL++ +  +E R +RLLG+ V
Sbjct: 303 RVREQVKEPALDDYLPLLAELVTNRE-RPVRLLGLGV 338