Pairwise Alignments

Query, 359 a.a., DNA polymerase IV (RefSeq) from Shewanella sp. ANA-3

Subject, 417 a.a., DNA-directed DNA polymerase (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  194 bits (492), Expect = 5e-54
 Identities = 132/364 (36%), Positives = 195/364 (53%), Gaps = 21/364 (5%)

Query: 4   IIHIDMDCYFAAVEMRDFPEYRGKPLAVGGSRVQRGVISTCNYEARKFGVRSAMATGYAL 63
           I H+D D +FA+VE RD P    +P+ +GG R  RGV+ST  Y AR  GVRSAM    AL
Sbjct: 37  IAHMDCDAFFASVEKRDNPALADRPVIIGGGR--RGVVSTACYVARIKGVRSAMPMFKAL 94

Query: 64  KLCPDLILVPGRMQVYKEVSQQIRAIFCRYTELIEPLSLDEAYLDVSDCKLFKGS--ATL 121
            LCPD +++  R + Y E S+ IRA+    T  +EPLSLDEA++D+       G+  A +
Sbjct: 95  ALCPDAVVIKPRFEAYVEASRAIRAMMDEMTPDVEPLSLDEAFMDLGGTARLHGAPPAVM 154

Query: 122 IAEAIRRDILAETGLTASAGVAPIKFLAKVASDLNKPNGQCVIPPDEVAEFVKSLSLRKI 181
           +A  ++R +  E GLT S G++  KFLAK+ASDL+KP G  VI   E  +F+    +R I
Sbjct: 155 LARLVKR-MEDELGLTGSIGLSHNKFLAKIASDLDKPRGFAVIGKAETLDFLADKPVRMI 213

Query: 182 PGVGKVTAEKLSSLGLNTCADVQAYPKQELIARFGKFGTVLVERAHGIDERGISVSRERK 241
            GVG      L + G+ T  D+  + + +L+ARFG  G  L   A G D R +S     K
Sbjct: 214 WGVGAAGQAALEAAGIRTFTDLARWEQTDLVARFGSMGLRLWHLARGEDARAVSGRSPVK 273

Query: 242 SVGVETTLAQDIYTLEQCQQVMPGLIQELSSRLGRSAKGRQIHKQVV--KLKFNDFKQTT 299
           S+  ETT ++D         ++ G +  ++ ++   AK + +  +VV  KLK +D    T
Sbjct: 274 SISNETTFSEDTAD----PDLLEGHVWRMAEKVAGRAKAQGLAGRVVVLKLKKSDHGLIT 329

Query: 300 IEHR---SDEVSVVMFYELLSQAMARQEGRGIRLLGVSV-------GLAESKDTLSPLMV 349
             H    + +++  +F E ++   A  +G+  RLLGV +       G   S D L P  V
Sbjct: 330 RRHALRDATQIADRVFREAMALFRAVPDGQSYRLLGVGLSDLVPEDGGDLSGDLLDPGAV 389

Query: 350 RETK 353
           R  +
Sbjct: 390 RRAR 393