Pairwise Alignments

Query, 667 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

Subject, 528 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  214 bits (544), Expect = 1e-59
 Identities = 138/359 (38%), Positives = 196/359 (54%), Gaps = 10/359 (2%)

Query: 307 APVTEAFWNACFVALGIMLLVGITVWLMLLPFRRQLSKLLDAMEDIAEGDSDLSQRILME 366
           A V  A   A   ALG     G   +L L P    L +L +    +  GD+ + Q I   
Sbjct: 174 AGVAIALATAAAAALG----AGGLAYLALAP----LQQLAEQARQV--GDNPVGQLIYAG 223

Query: 367 REDELGKLGDAFNRFAEKVQQMLLHTRNLTQEVGTGVMDARQVCDLAVSSVSSQKQQIDS 426
           R DE G++  A      +   M+    + ++++     +     D +  S S Q+ + D 
Sbjct: 224 RRDEYGQIAFAMKMLETEAGAMVGRIGDASRQLSQHAHELLGAMDSSTQSASRQQSETDQ 283

Query: 427 VATAATQMAQTSQEMAISAQRANDFAEKAQTQAHDGTQIVSRATEGMKALSVQVIEAAKV 486
           VATA  QMA + QE+A +AQR  + A +A ++   GT++V+R    +  L+  + +A  V
Sbjct: 284 VATAINQMAASVQEVANNAQRTAEAASRADSETATGTEVVNRTGAAIGQLAQDIQQAGDV 343

Query: 487 IKELRSSSEQIGEVLSVIRNIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRT 546
           I EL + S  I +VL VIR IA+QTNLLALNAAIEAARAGEQGRGFAVVADEVR LASRT
Sbjct: 344 IHELEAHSNDITKVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLASRT 403

Query: 547 QDSTANIQGIIQTLQQSALQAEQVMESGVEQARVGQDLTTQVEQALSDIASAIVSIQQQT 606
           Q ST  I G+I  LQ  A QA +VM+   EQA    +   Q  ++L  I S +  I + +
Sbjct: 404 QQSTQEINGMIGALQGGARQAVEVMQRSREQAMQSVEHAAQAARSLHGINSRVTEISEMS 463

Query: 607 VEITVAIGQQAVVAEEVAQNVVSVRGLSDQSLLSSQDLSQSLQGFEQATHELTRNIGQF 665
            +I  A+ QQ+ V+E + QN+VS+RG SD  + +     QS  G  +  + +   + QF
Sbjct: 464 QQIAAAVEQQSAVSENINQNIVSIRGGSDHHVANGLRSRQSASGVAELANSMEVLVQQF 522