Pairwise Alignments

Query, 667 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

Subject, 646 a.a., Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  209 bits (533), Expect = 2e-58
 Identities = 180/678 (26%), Positives = 297/678 (43%), Gaps = 50/678 (7%)

Query: 4   IKRSLSLQLVVTIVGALAVLLTLVAALLVNKESNNTRKQVDADISALVALKANEIGGYFV 63
           IK+ L+    V    A   +L + A ++VN     T   VD+    +  +  N +  +F 
Sbjct: 3   IKQKLTWAFAVI---ACLPILVVAAIVVVNLRDKATSDFVDSSAREIRQVD-NAMQLFFD 58

Query: 64  AKGQVIHSVFAEP---GLINWFSQYHARGS--NLANDQQYQDIIRYFRSFSDRDTDVKSV 118
              Q ++ + A P   G  + F  Y          ND+Q  ++   F S +        V
Sbjct: 59  GITQNVNYIAAHPLIAGASDDFRNYMGATPPPQSENDRQATEL---FASIAKAHPAYSYV 115

Query: 119 FFGSANTFEYFDLNGRFDGDP------NYYTNKRPWWQEAIDQRGLFV-GDPAVDANDGS 171
            +G         +NG +   P      NY    RPW++ A+   G  V  D    AND +
Sbjct: 116 SYGL--------INGSYIMTPEDPKMSNYDPRVRPWYKTAMANAGKTVRSDAYYWANDDA 167

Query: 172 ISATVKTPVYGANGELIGIGGMDILIDTIGKTLLAPIKYRNYGQAFLMTDEGKLVYFPGF 231
           +  +    +    G   G+  +D+ +  +   ++  IK    G   LM   G ++  P  
Sbjct: 168 VLVSTIRAIPNKLGNPGGVVNIDVSLKQL-TNIVKQIKLGESGYLMLMEKNGTVLVDP-- 224

Query: 232 SDKFPPGSLANQIDSQFKDTSGFTALRQQMQREAQGFAEVTFNGVPQRVTFVSVGGDYPK 291
                      Q +  FK          ++ + A G  EVT NG        S      +
Sbjct: 225 ----------KQPEHNFKKLGELGDGFSELAKTASGLVEVTLNGERYMANVYSS----EQ 270

Query: 292 QKWHLAFMLPHEVIEAPVTEAFWNACFVALGIMLLVGITVWLMLLPFRRQLSKLLDAMED 351
             W+   ++  + + A  T   W    +A  + ++  I          R +  +   +E 
Sbjct: 271 LGWNFIGLIKQDEVMASATRLTWLIGIIAAVLAVVFAIVGASFARVIVRPIHSVSSGLEG 330

Query: 352 IAEGDSDLSQRILMEREDELGKLGDAFNRFAEKVQQMLLHTRNLTQEVGTGVMDARQVCD 411
           IA G+ DL+Q + +  +DE  +L   FN+F   ++ ++ H      ++      + +V +
Sbjct: 331 IAGGEGDLTQNLAVRGKDETAQLAGWFNKFLTAIRSLIQHIGQAAGKILEASHSSTRVSN 390

Query: 412 LAVSSVSSQKQQIDSVATAATQMAQTSQEMAISAQRANDFAEKAQTQAHDGTQIVSRATE 471
               +   Q++ +D V+TA  +M  TS E+A S  +A D A+  Q QA +G + +  A  
Sbjct: 391 DMAEAAGRQREAVDMVSTAFHEMVATSNEVARSCSQAADSADNGQQQAREGQRQIDDAVR 450

Query: 472 GMKALSVQVIEAAKVIKELRSSSEQIGEVLSVIRNIADQTNLLALNAAIEAARAGEQGRG 531
            +  LS ++  +AK + +L   S  I  +L+ IR+IA+QTNLLALNAAIEAARAGEQGRG
Sbjct: 451 SVDQLSEELTRSAKDMTQLEKDSAGIQSILNTIRSIAEQTNLLALNAAIEAARAGEQGRG 510

Query: 532 FAVVADEVRTLASRTQDSTANIQGIIQTLQQSALQAEQVMESGVEQARVGQDLTTQVEQA 591
           FAVVADEVR LA RT DSTA I  ++  L +      Q M + ++   V Q   T++ QA
Sbjct: 511 FAVVADEVRALAKRTSDSTAEIDSLLGNLAKRTASVAQQMHASLD---VSQQSVTKIGQA 567

Query: 592 LS---DIASAIVSIQQQTVEITVAIGQQAVVAEEVAQNVVSVRGLSDQSLLSSQDLSQSL 648
            S    I  ++  I+    +I  A  +Q  VAE++ +++  + G +      S       
Sbjct: 568 RSSFGQIRESVDVIRDMNTQIATAAEEQHQVAEDINRHISQIHGDAQLIAQLSDSARADS 627

Query: 649 QGFEQATHELTRNIGQFK 666
           +  E  + EL   + +FK
Sbjct: 628 RSLEMLSSELDGLVRKFK 645