Pairwise Alignments

Query, 370 a.a., TRAP dicarboxylate transporter- DctP subunit (RefSeq) from Shewanella sp. ANA-3

Subject, 359 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  299 bits (766), Expect = 7e-86
 Identities = 146/324 (45%), Positives = 207/324 (63%), Gaps = 2/324 (0%)

Query: 42  VIEWRLATSWPKNFAGLGMAPERFAKLVNEMSHGRLQIHVYGAGELMPAFAVFDGVSQGK 101
           V +  LA +W  N   LG AP+  AKL  EMS+GR+QI +  A +      VFD V  G+
Sbjct: 32  VYKLTLAETWGANTPILGDAPKNMAKLAAEMSNGRIQIRIDSANKHKAPLGVFDMVKSGQ 91

Query: 102 IQMAHAASYYWKGKAPASQFFSSIPFGMTAQEMNGWLHYGGGMALWEEVYRPFGIIPLAG 161
             + H++SYYWKGK P + FFSS+PFGM A E   W +YGGGM L E+VY P  ++   G
Sbjct: 92  YDLGHSSSYYWKGKVPNTLFFSSMPFGMIATEQYAWFYYGGGMPLMEKVYAPHNLLSFPG 151

Query: 162 GNTGMQMGGWFNKPINSIADFKGLKIRMPGLGGEVLKRVGAVPVNMAGRELYGALQTGSI 221
           GN+ +QMGGWF K INS+ D +GLK+R+PG  GEVL ++GA P N+A  ELY +L+ G+I
Sbjct: 152 GNSDIQMGGWFKKEINSVDDLQGLKMRIPGFAGEVLAKLGAKPTNIAPGELYTSLERGTI 211

Query: 222 DAAEWVGPVNDLAFGLHKVAKYYYYPGWHEPGSNMEFLINKGAFESLPQDLQAIVKTAAR 281
           DA EWVGP  DL  G HK+A  YYY  WHEPGS  +FL+NK  +++LP+D+Q I++TA R
Sbjct: 212 DALEWVGPAFDLRMGFHKIAP-YYYTAWHEPGSETQFLVNKKKWDTLPKDIQVILETAFR 270

Query: 282 AINQDMLDEYTTRNVTALDTLVKD-EGVVLKAFPPQVLTELERISQQVIEEQAEQDPMMR 340
               DM ++    N T+   +  +   + ++ FPP VL  L + + ++++EQA  DP+ +
Sbjct: 271 VAAFDMYNQAIDANATSWAAMKSEYPDIKVRDFPPAVLAALRQANNELLQEQAASDPLAK 330

Query: 341 KVYRAYHAYEQGGREYHKISEDAY 364
           ++  +  AY    R++ +IS  AY
Sbjct: 331 EIIDSQQAYLTKVRDWTRISTQAY 354