Pairwise Alignments

Query, 620 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

Subject, 587 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  283 bits (725), Expect = 1e-80
 Identities = 189/619 (30%), Positives = 310/619 (50%), Gaps = 36/619 (5%)

Query: 1   MLIRSKLLLSAAVSVTALIAMFGLQLHSNSVESELSHAAQSVLELERDVLLLRKNEKDFF 60
           M IR KL     +++   IA+F           EL+ A   V +LE  +L LR+NEKDF 
Sbjct: 1   MNIRHKLYTLGIIAILGSIAIFFTTSQFAQTNDELNRAINQVDKLEVRLLNLRRNEKDFL 60

Query: 61  GRKDMQYVQLHGEVHAKIDELVPNLESIFKKYKVSTAPLESFDRNLNQYQVAFNEVVQLQ 120
            R D +Y+    +       L   L++I  KY++  +   +   +L +Y+  F ++V+  
Sbjct: 61  LRSDAKYLDTFQKNTDLFLNLQTELDAIMLKYELGDS--NALRTDLLEYKQGFEQLVRAY 118

Query: 121 QEIGLTPKTGLYGTLRTAVHNVESMLKEYDQLSLEVAMLQLRRNEKDFMLRREMSYVETF 180
           Q +GL P++GL+ +   A+   +      + L+L                          
Sbjct: 119 QTLGLNPESGLWKSYYQALEQAKQQASAEELLAL-------------------------- 152

Query: 181 DSNIAQFNTSLRASSLDFDTQNKIAALIEQYQKDFKSLVNKEQQLGLSEKDGTMAKLIAA 240
                 F+  + A S +    N+ + LI+  Q    ++VN+ + +GL   +G +    + 
Sbjct: 153 ----VDFHQQVLAGSANSSALNQFSDLIKSAQ----AVVNQAKVIGLKYNEGLLGATRSH 204

Query: 241 NKLTEASADELHNLALKAIDDTESSSVNIGILVFVIIALILAVITYLIIRSIITPVERIT 300
           +   E           +A+DD + +     + V + + LI+ ++ + I RSI   V ++ 
Sbjct: 205 SHDVEEMFKAFSKTLTQAVDDKQKTMTTTKLSVTIAVVLIILLVIFQISRSINLQVSQLL 264

Query: 301 QVISRIEVSKDLTLRCDASTQDELGEIAQHFNSMVGSFQQLIEQVIDSVATINTSCKSVS 360
            VI RI  S D++LR +    DE+  +A++FNS++  F+ LI         + +S  S+ 
Sbjct: 265 LVIQRIAQSNDISLRAELKGNDEITAVARYFNSLLDKFEHLISSSQTKSHQLYSSTSSMH 324

Query: 361 ENAMLASEGVAQQLNETDMVATAITEMGATIDEIAKTTELAALKAGKTHDNAQLGQTEVE 420
           +      E    Q     ++AT++ +M +TI EI+++T +A     +   NA+ G++ V 
Sbjct: 325 DELEQVIEQFNVQSEHMGLMATSVQQMVSTISEISESTNIAVDGVNQAARNAEQGRSVVV 384

Query: 421 QTILKIRQLSEQINSSASVVDELERDSETIGSVLDVIRGIAEQTNLLALNAAIEAARAGE 480
            T+  I  LS  +  S   +  L    E IG  + +I+GIAEQTNLLALNAAIEAARAGE
Sbjct: 385 TTVKNIDLLSSTLQKSQHSIGSLNAFVEKIGGAVSIIQGIAEQTNLLALNAAIEAARAGE 444

Query: 481 QGRGFAVVADEVRSLAMRTQTSTQEIANIIQTLQSRTRAIVQLMDASQKQGAESAEQAAA 540
           QGRGFAVVADEVRSLA RT  ST+EI  ++  +QS+   +V  +D    QG E+   +  
Sbjct: 445 QGRGFAVVADEVRSLATRTHQSTEEITRVVSNIQSQMSQVVDDIDLCNNQGQETLSASRQ 504

Query: 541 AGELLKLINTDVHNIMDMSTQIAAAIEEQSMVAAEVNKNVVVIRDIAEDSSRAADANASA 600
             E L+ I  D+H I D S +IAAAIEEQ  V   V++++  +  I+E++ R+A    + 
Sbjct: 505 LDESLQQILRDMHTIQDNSQRIAAAIEEQGSVMNHVSESIAELNTISENNMRSAQQCLTE 564

Query: 601 SDELKSRAEYLVSAVSHFK 619
            D +  +A  +  AV+ F+
Sbjct: 565 VDTVSRQAHAMDEAVAEFR 583