Pairwise Alignments

Query, 646 a.a., diguanylate cyclase (RefSeq) from Shewanella sp. ANA-3

Subject, 485 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  116 bits (291), Expect = 2e-30
 Identities = 90/276 (32%), Positives = 136/276 (49%), Gaps = 17/276 (6%)

Query: 368 LKSEVYAAMNDLPSAYQTLQQFVALTRKVEDNSFAHQTTELKVKFDTSWIESENKRLLDN 427
           L  + Y   N L  A   L+Q           +F++Q     V  ++  +      L+  
Sbjct: 219 LHGDEYDGANSL-QASTGLEQLATRILTSPSAAFSYQRNGKTVYLNSRLVPEFKWYLVVE 277

Query: 428 QKLKEQELALLEKNKSLQLIILLLTGCILAIVSLFAYKQVHRNRHLQTIALTDYLTQLPN 487
           Q+   QE  LL        + L++T  IL I ++   +     R L+ +A TD LT   N
Sbjct: 278 QEDAPQEQELLNTFWGNLALSLVVTIGILFISNMTLGRY---QRKLEIMASTDKLTGAAN 334

Query: 488 RRYIYAKAEQYFQQALKQ----QTPLSVIIFDADHFKKINDNFGHEIGDQALLTIAQASQ 543
           R+      E+YF QAL +    QT +S+++ D DHFKK+ND++GH +GD  L T+    +
Sbjct: 335 RQVF----EEYFHQALDKAKLSQTSISILLIDIDHFKKVNDSYGHSVGDLVLKTVTNLLR 390

Query: 544 ALTADRNLIGRIGGEEFLILLPNTNAERVWELAHELQTLITRYGAINLPVELKLTVSAGV 603
           +    ++++ R GGEEFL+LLP  +  R  ELA   +  I++       V + +TVS GV
Sbjct: 391 SQLKPQDILCRWGGEEFLVLLPEMDLSRAAELAERFRDSISQRELKVNGVHIAITVSIGV 450

Query: 604 ATLNTELGKQDDSFARLLKRADNALYDAKNAGKNCV 639
           A        +D     L+KRAD ALY AK AG+N V
Sbjct: 451 AEYQKLEPAED-----LIKRADLALYQAKEAGRNQV 481