Pairwise Alignments

Query, 410 a.a., response regulator receiver protein (RefSeq) from Shewanella sp. ANA-3

Subject, 635 a.a., NADH:ubiquinone oxidoreductase subunit (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 52.8 bits (125), Expect = 3e-11
 Identities = 22/51 (43%), Positives = 26/51 (50%)

Query: 17  INASKCKGCDACKQFCPTHAIHGASGAVHSIDEDKCLSCGQCLINCPFSAI 67
           IN   C GC  C + CP  AI G     H I  +KC+ CG C+  C F AI
Sbjct: 582 INPELCIGCHLCAKNCPADAISGLVRKPHVIHPEKCIKCGMCMARCKFKAI 632



 Score = 26.2 bits (56), Expect = 0.003
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 45  HSIDEDKCLSCGQCLINCPFSAI 67
           ++I+ + C+ C  C  NCP  AI
Sbjct: 580 YTINPELCIGCHLCAKNCPADAI 602